miRNA display CGI


Results 61 - 80 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 17137 0.66 0.560799
Target:  5'- cCCGCAcGGCCuggaGGCGC-UGGCGgccgcCGGCg- -3'
miRNA:   3'- -GGCGU-CCGG----UCGCGcACCGC-----GUCGac -5'
23561 3' -62.9 NC_005261.1 + 77094 0.66 0.560799
Target:  5'- gUGCAcGGCCAugacuuGCGCGaagcagcgcacGGCGCAGCg- -3'
miRNA:   3'- gGCGU-CCGGU------CGCGCa----------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 26815 0.66 0.560799
Target:  5'- uUGCccGCCGGCGUGUGGCccgcccguccGCuAGCUa -3'
miRNA:   3'- gGCGucCGGUCGCGCACCG----------CG-UCGAc -5'
23561 3' -62.9 NC_005261.1 + 40841 0.66 0.560799
Target:  5'- cCCGC-GGCaGGCGCGaaagccGCGCGGCg- -3'
miRNA:   3'- -GGCGuCCGgUCGCGCac----CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 35826 0.66 0.560799
Target:  5'- gCgGCAGGaggAGCGC-UGGCGCgaggAGCUGc -3'
miRNA:   3'- -GgCGUCCgg-UCGCGcACCGCG----UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 86262 0.66 0.554972
Target:  5'- gCCGCGGuCCAGCaGCGcggcggcgucgucggUGGCGcCGGCg- -3'
miRNA:   3'- -GGCGUCcGGUCG-CGC---------------ACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 104193 0.66 0.551097
Target:  5'- -gGCAGGgCAGCGCGc-GCGCcGCg- -3'
miRNA:   3'- ggCGUCCgGUCGCGCacCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 120650 0.66 0.551097
Target:  5'- cCUGCGGcGCaaGGCGCG-GGCGCGcCUGu -3'
miRNA:   3'- -GGCGUC-CGg-UCGCGCaCCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 109793 0.66 0.551097
Target:  5'- aCGCcauGGCCGGcCGCgGUGcGCGCGGguccCUGg -3'
miRNA:   3'- gGCGu--CCGGUC-GCG-CAC-CGCGUC----GAC- -5'
23561 3' -62.9 NC_005261.1 + 119034 0.66 0.551097
Target:  5'- -aGCGGGCCuGgGCGaaGGCgacugcgcccgGCAGCUGc -3'
miRNA:   3'- ggCGUCCGGuCgCGCa-CCG-----------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 46557 0.66 0.551097
Target:  5'- cCCGCAGcGCgAGCGCugcugcGaGCGCGGCc- -3'
miRNA:   3'- -GGCGUC-CGgUCGCGca----C-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 21616 0.66 0.551097
Target:  5'- uCgGCGGGCgggCGGUGCGagGGCuGCGGCa- -3'
miRNA:   3'- -GgCGUCCG---GUCGCGCa-CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 60658 0.66 0.551097
Target:  5'- cCCGgGGuGCCAGgGCGcggcggcgccacUGGCGgCGGCg- -3'
miRNA:   3'- -GGCgUC-CGGUCgCGC------------ACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 86467 0.66 0.551097
Target:  5'- aCGCcGGCCAGCGCcagcuucacGGCcaGCGGCa- -3'
miRNA:   3'- gGCGuCCGGUCGCGca-------CCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 12642 0.66 0.551097
Target:  5'- gCGCuuucgacCCGGCGCGUGGCGUuuGCg- -3'
miRNA:   3'- gGCGucc----GGUCGCGCACCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 87408 0.66 0.551097
Target:  5'- cUCGCGGcGCCAagccGCGCGgagcccgucaUGGCGgCGGCg- -3'
miRNA:   3'- -GGCGUC-CGGU----CGCGC----------ACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 73620 0.66 0.551097
Target:  5'- gUGCcGGCCuucGCGCGcGGCgGCuGCUGc -3'
miRNA:   3'- gGCGuCCGGu--CGCGCaCCG-CGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 117897 0.66 0.551097
Target:  5'- gCCGCGGGCgucGCuCGU-GCGCGGCUc -3'
miRNA:   3'- -GGCGUCCGgu-CGcGCAcCGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 90630 0.66 0.551097
Target:  5'- cCCGCAGGgggcggcucCCucGCGCGc-GCGCGGCUc -3'
miRNA:   3'- -GGCGUCC---------GGu-CGCGCacCGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 43611 0.66 0.551097
Target:  5'- aCGaCGGcGCCGGCgGCGgcgagGGCGCGcGCUc -3'
miRNA:   3'- gGC-GUC-CGGUCG-CGCa----CCGCGU-CGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.