miRNA display CGI


Results 41 - 60 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 107255 0.66 0.570547
Target:  5'- cCCGCGGGC--GCGCGggcacgggcgGGCGC-GCa- -3'
miRNA:   3'- -GGCGUCCGguCGCGCa---------CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 29737 0.66 0.570547
Target:  5'- gCCGCGGG-UAGCGuCGcGGCGC-GCg- -3'
miRNA:   3'- -GGCGUCCgGUCGC-GCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 22802 0.66 0.570547
Target:  5'- gUCGC-GGCCGGCG-GcGGCGCuGCc- -3'
miRNA:   3'- -GGCGuCCGGUCGCgCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 63776 0.66 0.570547
Target:  5'- aCGCcgAGGuCCAcGUGCGc-GCGCGGCUGc -3'
miRNA:   3'- gGCG--UCC-GGU-CGCGCacCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 67408 0.66 0.568594
Target:  5'- gCGCGcGCCGGCGCGcccggggccgccGGCGCGGaCUu -3'
miRNA:   3'- gGCGUcCGGUCGCGCa-----------CCGCGUC-GAc -5'
23561 3' -62.9 NC_005261.1 + 33802 0.66 0.567618
Target:  5'- aCGCGGGCCcgcucaagcugugcGGCGcCGUuucGGCGC-GCUu -3'
miRNA:   3'- gGCGUCCGG--------------UCGC-GCA---CCGCGuCGAc -5'
23561 3' -62.9 NC_005261.1 + 31581 0.66 0.564693
Target:  5'- aCCGCGccGGCgAGCGCGacgucgccgagcucgUcGCGCGGCUc -3'
miRNA:   3'- -GGCGU--CCGgUCGCGC---------------AcCGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 56710 0.66 0.560799
Target:  5'- cCUGCAGcGCCuGGCGCc-GGCGgCGGCg- -3'
miRNA:   3'- -GGCGUC-CGG-UCGCGcaCCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 33324 0.66 0.560799
Target:  5'- aCCGC-GGCCcuggAGgGCGUccgGGCGCAcGCg- -3'
miRNA:   3'- -GGCGuCCGG----UCgCGCA---CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 64185 0.66 0.560799
Target:  5'- gCCGCAGccccCCGGCGCGcUGGUcCAucuuGCUGg -3'
miRNA:   3'- -GGCGUCc---GGUCGCGC-ACCGcGU----CGAC- -5'
23561 3' -62.9 NC_005261.1 + 43196 0.66 0.560799
Target:  5'- uCUGCGGcGCCgAGCGCcgccGGCgGCGGCUu -3'
miRNA:   3'- -GGCGUC-CGG-UCGCGca--CCG-CGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 40841 0.66 0.560799
Target:  5'- cCCGC-GGCaGGCGCGaaagccGCGCGGCg- -3'
miRNA:   3'- -GGCGuCCGgUCGCGCac----CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 116481 0.66 0.560799
Target:  5'- gCGCGGGCgGG-GCG-GGCGC-GCg- -3'
miRNA:   3'- gGCGUCCGgUCgCGCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 17137 0.66 0.560799
Target:  5'- cCCGCAcGGCCuggaGGCGC-UGGCGgccgcCGGCg- -3'
miRNA:   3'- -GGCGU-CCGG----UCGCGcACCGC-----GUCGac -5'
23561 3' -62.9 NC_005261.1 + 77094 0.66 0.560799
Target:  5'- gUGCAcGGCCAugacuuGCGCGaagcagcgcacGGCGCAGCg- -3'
miRNA:   3'- gGCGU-CCGGU------CGCGCa----------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 29508 0.66 0.560799
Target:  5'- gCCGCuGGCCcGCGCGcucuucgccgUGGCGCucGUc- -3'
miRNA:   3'- -GGCGuCCGGuCGCGC----------ACCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 35826 0.66 0.560799
Target:  5'- gCgGCAGGaggAGCGC-UGGCGCgaggAGCUGc -3'
miRNA:   3'- -GgCGUCCgg-UCGCGcACCGCG----UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 98627 0.66 0.560799
Target:  5'- aCGgGGGCggcgggGGCGCGcGGCGCucggcGCUGg -3'
miRNA:   3'- gGCgUCCGg-----UCGCGCaCCGCGu----CGAC- -5'
23561 3' -62.9 NC_005261.1 + 26815 0.66 0.560799
Target:  5'- uUGCccGCCGGCGUGUGGCccgcccguccGCuAGCUa -3'
miRNA:   3'- gGCGucCGGUCGCGCACCG----------CG-UCGAc -5'
23561 3' -62.9 NC_005261.1 + 34460 0.66 0.560799
Target:  5'- cUCGC-GGCC--UGgGUGGCGCuGCUGc -3'
miRNA:   3'- -GGCGuCCGGucGCgCACCGCGuCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.