Results 41 - 60 of 791 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23561 | 3' | -62.9 | NC_005261.1 | + | 461 | 0.75 | 0.170769 |
Target: 5'- gCCGCGacGGCCGGCGgGaUGGCGCGGg-- -3' miRNA: 3'- -GGCGU--CCGGUCGCgC-ACCGCGUCgac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 138132 | 0.75 | 0.170769 |
Target: 5'- gCCGCGacGGCCGGCGgGaUGGCGCGGg-- -3' miRNA: 3'- -GGCGU--CCGGUCGCgC-ACCGCGUCgac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 59135 | 0.75 | 0.170769 |
Target: 5'- aCCGacuCAGGCCGGCGCGccccgGGCGCgcGGCg- -3' miRNA: 3'- -GGC---GUCCGGUCGCGCa----CCGCG--UCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 113036 | 0.75 | 0.170769 |
Target: 5'- -aGCGGGCC-GCGCGcGGCGUGGCg- -3' miRNA: 3'- ggCGUCCGGuCGCGCaCCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 15530 | 0.75 | 0.174994 |
Target: 5'- gCGC-GGCCggcGGCGCGgcgauggagcaGGCGCAGCUGa -3' miRNA: 3'- gGCGuCCGG---UCGCGCa----------CCGCGUCGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 108732 | 0.75 | 0.174994 |
Target: 5'- gCGCGGGCCAGCG-GcGGCGCcGCg- -3' miRNA: 3'- gGCGUCCGGUCGCgCaCCGCGuCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 99085 | 0.74 | 0.179312 |
Target: 5'- -gGCAGGgCGGCGCG-GcGCGCAGCg- -3' miRNA: 3'- ggCGUCCgGUCGCGCaC-CGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 64018 | 0.74 | 0.183279 |
Target: 5'- gCGUAGGUgAGCGUGUucucgucGGCGCGGCUc -3' miRNA: 3'- gGCGUCCGgUCGCGCA-------CCGCGUCGAc -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 75208 | 0.74 | 0.183724 |
Target: 5'- gCCGCGGgcGCCGGCGCccgcgcgGGCGCGGCc- -3' miRNA: 3'- -GGCGUC--CGGUCGCGca-----CCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 75165 | 0.74 | 0.183724 |
Target: 5'- gCCGCuguGcGCCAGCGaCGcGGCGCuGCUGc -3' miRNA: 3'- -GGCGu--C-CGGUCGC-GCaCCGCGuCGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 38516 | 0.74 | 0.183724 |
Target: 5'- aCGC-GGCCAcGCGCGcgaccgUGGCGgAGCUGg -3' miRNA: 3'- gGCGuCCGGU-CGCGC------ACCGCgUCGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 79971 | 0.74 | 0.183724 |
Target: 5'- gCGC-GGCgAGCGCGgcgcGGCGCGGCa- -3' miRNA: 3'- gGCGuCCGgUCGCGCa---CCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 29196 | 0.74 | 0.188232 |
Target: 5'- gCCGCGGcGCCcGCGCG-GGCGCGcGaCUGg -3' miRNA: 3'- -GGCGUC-CGGuCGCGCaCCGCGU-C-GAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 12302 | 0.74 | 0.188232 |
Target: 5'- gCCGCGGGCacgGGCGCGUagccggcgGGCGCGcGCUu -3' miRNA: 3'- -GGCGUCCGg--UCGCGCA--------CCGCGU-CGAc -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 71056 | 0.74 | 0.188232 |
Target: 5'- gCCGUGGGCCAgccgccGCGCGgcgGGCGgGGCg- -3' miRNA: 3'- -GGCGUCCGGU------CGCGCa--CCGCgUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 34797 | 0.74 | 0.188232 |
Target: 5'- aCCGCgAGGCgCGcgcGCGCGUGGCcGCGGCc- -3' miRNA: 3'- -GGCG-UCCG-GU---CGCGCACCG-CGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 79875 | 0.74 | 0.188232 |
Target: 5'- gCCGCAcaccuggacuGGCCGGCGCGgcuccgcgaGGCGguGCUc -3' miRNA: 3'- -GGCGU----------CCGGUCGCGCa--------CCGCguCGAc -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 79456 | 0.74 | 0.188232 |
Target: 5'- gCGCuGGCCGGCGCGcugggGGCGCucucGGCg- -3' miRNA: 3'- gGCGuCCGGUCGCGCa----CCGCG----UCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 58276 | 0.74 | 0.192372 |
Target: 5'- gCCGCgcucacgGGGCCGGCGCGccggggGGCGCGGg-- -3' miRNA: 3'- -GGCG-------UCCGGUCGCGCa-----CCGCGUCgac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 74343 | 0.74 | 0.192837 |
Target: 5'- aCCGCAGGCgCGGCgGCGgaaGGgGCGGCc- -3' miRNA: 3'- -GGCGUCCG-GUCG-CGCa--CCgCGUCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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