miRNA display CGI


Results 41 - 60 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 109793 0.66 0.551097
Target:  5'- aCGCcauGGCCGGcCGCgGUGcGCGCGGguccCUGg -3'
miRNA:   3'- gGCGu--CCGGUC-GCG-CAC-CGCGUC----GAC- -5'
23561 3' -62.9 NC_005261.1 + 19701 0.66 0.530899
Target:  5'- gCCGCagGGGUCGGCGgGgcagGGCGCcucgccgAGCg- -3'
miRNA:   3'- -GGCG--UCCGGUCGCgCa---CCGCG-------UCGac -5'
23561 3' -62.9 NC_005261.1 + 37598 0.66 0.541447
Target:  5'- gCGCGGGCCGcGCGCcUGuGCG-AGCg- -3'
miRNA:   3'- gGCGUCCGGU-CGCGcAC-CGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 127680 0.66 0.541447
Target:  5'- -aGUGGGCCcggcaGGCGCGccgggGGCGaCAGCg- -3'
miRNA:   3'- ggCGUCCGG-----UCGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 77094 0.66 0.560799
Target:  5'- gUGCAcGGCCAugacuuGCGCGaagcagcgcacGGCGCAGCg- -3'
miRNA:   3'- gGCGU-CCGGU------CGCGCa----------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 38567 0.66 0.531854
Target:  5'- gCGCGcugacgacGGUCAGCGUGcUGGCGC-GCa- -3'
miRNA:   3'- gGCGU--------CCGGUCGCGC-ACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 104193 0.66 0.551097
Target:  5'- -gGCAGGgCAGCGCGc-GCGCcGCg- -3'
miRNA:   3'- ggCGUCCgGUCGCGCacCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 67408 0.66 0.568594
Target:  5'- gCGCGcGCCGGCGCGcccggggccgccGGCGCGGaCUu -3'
miRNA:   3'- gGCGUcCGGUCGCGCa-----------CCGCGUC-GAc -5'
23561 3' -62.9 NC_005261.1 + 43196 0.66 0.560799
Target:  5'- uCUGCGGcGCCgAGCGCcgccGGCgGCGGCUu -3'
miRNA:   3'- -GGCGUC-CGG-UCGCGca--CCG-CGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 94540 0.66 0.541447
Target:  5'- -gGCAGGCCAGgaccuCGcCGUGGaGCcGCUGc -3'
miRNA:   3'- ggCGUCCGGUC-----GC-GCACCgCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 64185 0.66 0.560799
Target:  5'- gCCGCAGccccCCGGCGCGcUGGUcCAucuuGCUGg -3'
miRNA:   3'- -GGCGUCc---GGUCGCGC-ACCGcGU----CGAC- -5'
23561 3' -62.9 NC_005261.1 + 31581 0.66 0.564693
Target:  5'- aCCGCGccGGCgAGCGCGacgucgccgagcucgUcGCGCGGCUc -3'
miRNA:   3'- -GGCGU--CCGgUCGCGC---------------AcCGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 33802 0.66 0.567618
Target:  5'- aCGCGGGCCcgcucaagcugugcGGCGcCGUuucGGCGC-GCUu -3'
miRNA:   3'- gGCGUCCGG--------------UCGC-GCA---CCGCGuCGAc -5'
23561 3' -62.9 NC_005261.1 + 82797 0.66 0.541447
Target:  5'- gCCGCucggaGGGCUcGCG-GUGGCGcCAGCc- -3'
miRNA:   3'- -GGCG-----UCCGGuCGCgCACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 21616 0.66 0.551097
Target:  5'- uCgGCGGGCgggCGGUGCGagGGCuGCGGCa- -3'
miRNA:   3'- -GgCGUCCG---GUCGCGCa-CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 79486 0.66 0.541447
Target:  5'- nCGCGGGaguuucuuaaCAGCGCGcucuGCGCGGCg- -3'
miRNA:   3'- gGCGUCCg---------GUCGCGCac--CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 12642 0.66 0.551097
Target:  5'- gCGCuuucgacCCGGCGCGUGGCGUuuGCg- -3'
miRNA:   3'- gGCGucc----GGUCGCGCACCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 56710 0.66 0.560799
Target:  5'- cCUGCAGcGCCuGGCGCc-GGCGgCGGCg- -3'
miRNA:   3'- -GGCGUC-CGG-UCGCGcaCCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 108907 0.66 0.541447
Target:  5'- gCGCAcgcGGCCGG-GCGgcggcGGCGC-GCUGc -3'
miRNA:   3'- gGCGU---CCGGUCgCGCa----CCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 14126 0.66 0.531854
Target:  5'- aCUGCGGuGCCGgcccugugcGCGCGcuacgcgGGCGCcgGGCUGc -3'
miRNA:   3'- -GGCGUC-CGGU---------CGCGCa------CCGCG--UCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.