miRNA display CGI


Results 21 - 40 of 791 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 79486 0.66 0.541447
Target:  5'- nCGCGGGaguuucuuaaCAGCGCGcucuGCGCGGCg- -3'
miRNA:   3'- gGCGUCCg---------GUCGCGCac--CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 108907 0.66 0.541447
Target:  5'- gCGCAcgcGGCCGG-GCGgcggcGGCGC-GCUGc -3'
miRNA:   3'- gGCGU---CCGGUCgCGCa----CCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 68948 0.66 0.541447
Target:  5'- cCCGCgccgGGGUCGGCGCG-GGCG--GCUc -3'
miRNA:   3'- -GGCG----UCCGGUCGCGCaCCGCguCGAc -5'
23561 3' -62.9 NC_005261.1 + 37598 0.66 0.541447
Target:  5'- gCGCGGGCCGcGCGCcUGuGCG-AGCg- -3'
miRNA:   3'- gGCGUCCGGU-CGCGcAC-CGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 87408 0.66 0.551097
Target:  5'- cUCGCGGcGCCAagccGCGCGgagcccgucaUGGCGgCGGCg- -3'
miRNA:   3'- -GGCGUC-CGGU----CGCGC----------ACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 98892 0.66 0.541447
Target:  5'- gCCGCGcgcagcuuGGCC-GCG-GcGGCGCGGUUGg -3'
miRNA:   3'- -GGCGU--------CCGGuCGCgCaCCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 41874 0.66 0.531854
Target:  5'- gCCGCgccAGGCCAGUcaggGCGUcaGGUGCGcGCg- -3'
miRNA:   3'- -GGCG---UCCGGUCG----CGCA--CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 109793 0.66 0.551097
Target:  5'- aCGCcauGGCCGGcCGCgGUGcGCGCGGguccCUGg -3'
miRNA:   3'- gGCGu--CCGGUC-GCG-CAC-CGCGUC----GAC- -5'
23561 3' -62.9 NC_005261.1 + 14126 0.66 0.531854
Target:  5'- aCUGCGGuGCCGgcccugugcGCGCGcuacgcgGGCGCcgGGCUGc -3'
miRNA:   3'- -GGCGUC-CGGU---------CGCGCa------CCGCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 82797 0.66 0.541447
Target:  5'- gCCGCucggaGGGCUcGCG-GUGGCGcCAGCc- -3'
miRNA:   3'- -GGCG-----UCCGGuCGCgCACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 4856 0.66 0.530899
Target:  5'- cCCGUGGGCC-GCGCGcagGcagccgaagcccuGCGCGGCa- -3'
miRNA:   3'- -GGCGUCCGGuCGCGCa--C-------------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 38141 0.66 0.531854
Target:  5'- gCgGCAGcGgCGGCgGCGaggGGCGCGGCg- -3'
miRNA:   3'- -GgCGUC-CgGUCG-CGCa--CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 43611 0.66 0.551097
Target:  5'- aCGaCGGcGCCGGCgGCGgcgagGGCGCGcGCUc -3'
miRNA:   3'- gGC-GUC-CGGUCG-CGCa----CCGCGU-CGAc -5'
23561 3' -62.9 NC_005261.1 + 86467 0.66 0.551097
Target:  5'- aCGCcGGCCAGCGCcagcuucacGGCcaGCGGCa- -3'
miRNA:   3'- gGCGuCCGGUCGCGca-------CCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 90396 0.66 0.541447
Target:  5'- gCCGCgacguggaAGGCCcuguacgugAGCGCccugGUGGCGCuGCg- -3'
miRNA:   3'- -GGCG--------UCCGG---------UCGCG----CACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 61194 0.66 0.531854
Target:  5'- gCCGaGGGCCGcgcGCGCGgccucGGCGuCGGCg- -3'
miRNA:   3'- -GGCgUCCGGU---CGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 95831 0.66 0.541447
Target:  5'- uCCGC--GCCAaccacGUGCa-GGCGCAGCUGg -3'
miRNA:   3'- -GGCGucCGGU-----CGCGcaCCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 99016 0.66 0.541447
Target:  5'- gCGCgaGGGCCAugGCGgcuaccGGUGCGGCUGc -3'
miRNA:   3'- gGCG--UCCGGUcgCGCa-----CCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 60658 0.66 0.551097
Target:  5'- cCCGgGGuGCCAGgGCGcggcggcgccacUGGCGgCGGCg- -3'
miRNA:   3'- -GGCgUC-CGGUCgCGC------------ACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 90630 0.66 0.551097
Target:  5'- cCCGCAGGgggcggcucCCucGCGCGc-GCGCGGCUc -3'
miRNA:   3'- -GGCGUCC---------GGu-CGCGCacCGCGUCGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.