miRNA display CGI


Results 21 - 40 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 3502 0.66 0.531854
Target:  5'- uUCGCGccGCCAGCGCGgccgccuccaGCGCGGCg- -3'
miRNA:   3'- -GGCGUc-CGGUCGCGCac--------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 3537 0.75 0.158637
Target:  5'- gCCGCcucGGcGCgCAGCGCGgcgGGCGCGGCg- -3'
miRNA:   3'- -GGCG---UC-CG-GUCGCGCa--CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 3728 0.66 0.580335
Target:  5'- gCGCAGGCUGuGCuCGUaGUGCAGCa- -3'
miRNA:   3'- gGCGUCCGGU-CGcGCAcCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 3828 0.79 0.088818
Target:  5'- gCCGCGGGCCcgGGCGC-UGGCGgCAGCg- -3'
miRNA:   3'- -GGCGUCCGG--UCGCGcACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 3864 0.73 0.233328
Target:  5'- gCCGCGcGGCCGGCGagcacgGcGCGCAGCUc -3'
miRNA:   3'- -GGCGU-CCGGUCGCgca---C-CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 4038 0.67 0.49415
Target:  5'- gCgGCAGcGCCcacAGCGCGUucuGCGCGGCc- -3'
miRNA:   3'- -GgCGUC-CGG---UCGCGCAc--CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 4192 0.68 0.413435
Target:  5'- gCCGU-GGCCggccauggccgcgAGCGCGgcggcGGCGUAGUUGa -3'
miRNA:   3'- -GGCGuCCGG-------------UCGCGCa----CCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 4295 0.69 0.365645
Target:  5'- gCCGCGGGCCccgcGGCcgccGCGUaGcGCGCGGCc- -3'
miRNA:   3'- -GGCGUCCGG----UCG----CGCA-C-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 4348 0.74 0.19754
Target:  5'- gCCGCGGGCUuGCGCagaccacagGUaGGCGCGGCa- -3'
miRNA:   3'- -GGCGUCCGGuCGCG---------CA-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 4390 0.66 0.541447
Target:  5'- gCGCAcgcGGCCGG-GCGgcggcGGCGC-GCUGc -3'
miRNA:   3'- gGCGU---CCGGUCgCGCa----CCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 4391 0.66 0.570547
Target:  5'- gCGCcGGCCacGGCGCGcacgcggccGCGCAGCg- -3'
miRNA:   3'- gGCGuCCGG--UCGCGCac-------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 4502 0.68 0.426185
Target:  5'- gCGCGGGCCccagucgcgcgcccGCGCG-GGCGCcGCg- -3'
miRNA:   3'- gGCGUCCGGu-------------CGCGCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 4570 0.68 0.44004
Target:  5'- uCCGCGGGCgGGUccgGCGgGGCGCcccccGGCg- -3'
miRNA:   3'- -GGCGUCCGgUCG---CGCaCCGCG-----UCGac -5'
23561 3' -62.9 NC_005261.1 + 4586 0.7 0.335482
Target:  5'- aCGCAGcGCUcGCGCaGcGGCGCGGCg- -3'
miRNA:   3'- gGCGUC-CGGuCGCG-CaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 4620 0.68 0.457712
Target:  5'- cCCaCAGcGCCAGCGCGaggugGGCcgugaGCAGCg- -3'
miRNA:   3'- -GGcGUC-CGGUCGCGCa----CCG-----CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 4856 0.66 0.530899
Target:  5'- cCCGUGGGCC-GCGCGcagGcagccgaagcccuGCGCGGCa- -3'
miRNA:   3'- -GGCGUCCGGuCGCGCa--C-------------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 5206 0.74 0.192837
Target:  5'- gCGCGGuggcgcGCCcGCGgGUGGCGCAGCg- -3'
miRNA:   3'- gGCGUC------CGGuCGCgCACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 5257 0.67 0.502532
Target:  5'- gUCGCGGuGCgCGGCGacgaaggcggccaCGUcGGCGCAGCg- -3'
miRNA:   3'- -GGCGUC-CG-GUCGC-------------GCA-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 5276 0.66 0.551097
Target:  5'- aCGCcauGGCCGGcCGCgGUGcGCGCGGguccCUGg -3'
miRNA:   3'- gGCGu--CCGGUC-GCG-CAC-CGCGUC----GAC- -5'
23561 3' -62.9 NC_005261.1 + 5826 0.75 0.166636
Target:  5'- gCGCGGGCCAG-GCGUcGGCgGCGGCc- -3'
miRNA:   3'- gGCGUCCGGUCgCGCA-CCG-CGUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.