Results 21 - 40 of 791 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23561 | 3' | -62.9 | NC_005261.1 | + | 101362 | 0.78 | 0.106219 |
Target: 5'- gCGCGGGCCAGCGUGcggggcgGGCGgAGCg- -3' miRNA: 3'- gGCGUCCGGUCGCGCa------CCGCgUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 1744 | 0.78 | 0.106219 |
Target: 5'- gCGCGGGCCcaGGCGCGUGGCcaccguGUAGCg- -3' miRNA: 3'- gGCGUCCGG--UCGCGCACCG------CGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 48427 | 0.78 | 0.108953 |
Target: 5'- -aGCAGGCgguacagcucgCGGUGCGUGGCGCGGCc- -3' miRNA: 3'- ggCGUCCG-----------GUCGCGCACCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 35385 | 0.77 | 0.117555 |
Target: 5'- gCUGCuGGcCCAGCaCGUGGCGCGGCg- -3' miRNA: 3'- -GGCGuCC-GGUCGcGCACCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 20557 | 0.77 | 0.12056 |
Target: 5'- gCCGCGGGCCcggccgGGCGCGgcggGGCGCuuAGCg- -3' miRNA: 3'- -GGCGUCCGG------UCGCGCa---CCGCG--UCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 37224 | 0.76 | 0.133308 |
Target: 5'- cCCGCGGGCUuGCGC--GGCGCGGCg- -3' miRNA: 3'- -GGCGUCCGGuCGCGcaCCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 133714 | 0.76 | 0.143673 |
Target: 5'- gCCGCGGcGCCcGCGCGgGGCGCGaCUGg -3' miRNA: 3'- -GGCGUC-CGGuCGCGCaCCGCGUcGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 78843 | 0.76 | 0.147288 |
Target: 5'- gCC-CGGGCuCGGCGcCGUGGCGCGggcGCUGg -3' miRNA: 3'- -GGcGUCCG-GUCGC-GCACCGCGU---CGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 35733 | 0.76 | 0.147288 |
Target: 5'- gCGCaAGGCCcaGGCGC-UGGCGCGGCg- -3' miRNA: 3'- gGCG-UCCGG--UCGCGcACCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 20181 | 0.75 | 0.150986 |
Target: 5'- gCCGCGGccGCCAGCGCG-GGCGUcGCg- -3' miRNA: 3'- -GGCGUC--CGGUCGCGCaCCGCGuCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 54890 | 0.75 | 0.150986 |
Target: 5'- uCUGCGGGCCAcgguggcggcggGCgGCGUGGCGCcgcccgAGCUGc -3' miRNA: 3'- -GGCGUCCGGU------------CG-CGCACCGCG------UCGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 49738 | 0.75 | 0.158637 |
Target: 5'- gCGCGGGUCgAGCGCGgcgcgcuccGGCGCGGCa- -3' miRNA: 3'- gGCGUCCGG-UCGCGCa--------CCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 108054 | 0.75 | 0.158637 |
Target: 5'- gCCGCcucGGcGCgCAGCGCGgcgGGCGCGGCg- -3' miRNA: 3'- -GGCG---UC-CG-GUCGCGCa--CCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 3537 | 0.75 | 0.158637 |
Target: 5'- gCCGCcucGGcGCgCAGCGCGgcgGGCGCGGCg- -3' miRNA: 3'- -GGCG---UC-CG-GUCGCGCa--CCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 73778 | 0.75 | 0.162592 |
Target: 5'- gCGCuGGCCuGCGaCGUGcGCGCGGCg- -3' miRNA: 3'- gGCGuCCGGuCGC-GCAC-CGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 5826 | 0.75 | 0.166636 |
Target: 5'- gCGCGGGCCAG-GCGUcGGCgGCGGCc- -3' miRNA: 3'- gGCGUCCGGUCgCGCA-CCG-CGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 30348 | 0.75 | 0.169519 |
Target: 5'- gCCGCgcucgcggcccugaAGGCCGGCGCGccgGGCGCcGCg- -3' miRNA: 3'- -GGCG--------------UCCGGUCGCGCa--CCGCGuCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 134865 | 0.75 | 0.169519 |
Target: 5'- gCCGCgcucgcggcccugaAGGCCGGCGCGccgGGCGCcGCg- -3' miRNA: 3'- -GGCG--------------UCCGGUCGCGCa--CCGCGuCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 461 | 0.75 | 0.170769 |
Target: 5'- gCCGCGacGGCCGGCGgGaUGGCGCGGg-- -3' miRNA: 3'- -GGCGU--CCGGUCGCgC-ACCGCGUCgac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 104978 | 0.75 | 0.170769 |
Target: 5'- gCCGCGacGGCCGGCGgGaUGGCGCGGg-- -3' miRNA: 3'- -GGCGU--CCGGUCGCgC-ACCGCGUCgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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