miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 3' -54.8 NC_005261.1 + 91950 0.67 0.830102
Target:  5'- cGUUGCCcgGCCAgagcgccccggggACACGGUCG-Cg- -3'
miRNA:   3'- -UAACGGuaCGGUa------------UGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 92741 0.71 0.623022
Target:  5'- --aGCCG-GCCAUGCACauGGCCGUgUUc -3'
miRNA:   3'- uaaCGGUaCGGUAUGUG--CCGGCAgAA- -5'
23562 3' -54.8 NC_005261.1 + 98685 0.72 0.569987
Target:  5'- --cGCCGggGCCGgagGCGCGGCCGgagCUg -3'
miRNA:   3'- uaaCGGUa-CGGUa--UGUGCCGGCa--GAa -5'
23562 3' -54.8 NC_005261.1 + 98765 0.66 0.874183
Target:  5'- gGUUGCCGcUGCCGccGC-CGGCCGcCg- -3'
miRNA:   3'- -UAACGGU-ACGGUa-UGuGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 101094 0.73 0.487914
Target:  5'- -gUGCCAUGCCAcucggUGcCACGGCCGgcgCg- -3'
miRNA:   3'- uaACGGUACGGU-----AU-GUGCCGGCa--Gaa -5'
23562 3' -54.8 NC_005261.1 + 102408 0.7 0.665631
Target:  5'- --cGCCAgcgcuccuccUGCCGcUGCGCGGCCGcCUc -3'
miRNA:   3'- uaaCGGU----------ACGGU-AUGUGCCGGCaGAa -5'
23562 3' -54.8 NC_005261.1 + 102683 0.66 0.902488
Target:  5'- --cGCCGcGUCcgcCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUaCGGuauGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 104732 0.7 0.69731
Target:  5'- --cGUCGUGCCgcGUGCGCGcGCCGuUCUg -3'
miRNA:   3'- uaaCGGUACGG--UAUGUGC-CGGC-AGAa -5'
23562 3' -54.8 NC_005261.1 + 106501 0.68 0.778416
Target:  5'- --gGCCggGCCAUcGCGCGGCCaGUUc- -3'
miRNA:   3'- uaaCGGuaCGGUA-UGUGCCGG-CAGaa -5'
23562 3' -54.8 NC_005261.1 + 107945 0.67 0.8586
Target:  5'- --cGCCAcguaGuCCGUGCGCGGCCG-Cg- -3'
miRNA:   3'- uaaCGGUa---C-GGUAUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 109126 0.68 0.81589
Target:  5'- --gGCgGUGUCGUGCGCGGCCc---- -3'
miRNA:   3'- uaaCGgUACGGUAUGUGCCGGcagaa -5'
23562 3' -54.8 NC_005261.1 + 110503 0.69 0.718149
Target:  5'- --aGCUG-GCCAgcguCACGGCCGUCg- -3'
miRNA:   3'- uaaCGGUaCGGUau--GUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 110796 0.7 0.664569
Target:  5'- --cGCCAaacucauUGUaaUAUGCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGU-------ACG--GUAUGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 118138 0.66 0.902488
Target:  5'- --cGCUcgGCCGgcucgcgcagACGCuGGCCGUCg- -3'
miRNA:   3'- uaaCGGuaCGGUa---------UGUG-CCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 119127 0.67 0.842128
Target:  5'- --gGCCGcgGCCGcgGCGCGGCCaUCUc -3'
miRNA:   3'- uaaCGGUa-CGGUa-UGUGCCGGcAGAa -5'
23562 3' -54.8 NC_005261.1 + 120251 0.73 0.518125
Target:  5'- --cGCCGcggcUGCCAcGC-CGGCCGUCUa -3'
miRNA:   3'- uaaCGGU----ACGGUaUGuGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 125693 0.67 0.842128
Target:  5'- uUUGCCGggcuugGCCcgGCgACGGCCGcCg- -3'
miRNA:   3'- uAACGGUa-----CGGuaUG-UGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 126542 0.67 0.842128
Target:  5'- --cGCCucgGCCAcGCGCcGCCGUCg- -3'
miRNA:   3'- uaaCGGua-CGGUaUGUGcCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 128971 1.04 0.005427
Target:  5'- uAUUGCCAUGCCAUACACGGCCGUCUUg -3'
miRNA:   3'- -UAACGGUACGGUAUGUGCCGGCAGAA- -5'
23562 3' -54.8 NC_005261.1 + 132794 0.69 0.738669
Target:  5'- uGUUGCCGccGCCGcggcCGCGGUCGUCUc -3'
miRNA:   3'- -UAACGGUa-CGGUau--GUGCCGGCAGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.