miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 3' -54.8 NC_005261.1 + 48795 0.66 0.881624
Target:  5'- --cGCCGgcuccgugagGCCGUGCGCGG-CGUCc- -3'
miRNA:   3'- uaaCGGUa---------CGGUAUGUGCCgGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 50511 0.66 0.881624
Target:  5'- --cGCCcaGCCAgcgcaGCAgGGCCGUCg- -3'
miRNA:   3'- uaaCGGuaCGGUa----UGUgCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 51803 0.68 0.80677
Target:  5'- --gGCCAUGCuCGUGCuGCGGCUGgugCg- -3'
miRNA:   3'- uaaCGGUACG-GUAUG-UGCCGGCa--Gaa -5'
23562 3' -54.8 NC_005261.1 + 52424 0.66 0.874183
Target:  5'- --cGCUGgacCCGUACucgACGGCCGUCUg -3'
miRNA:   3'- uaaCGGUac-GGUAUG---UGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 58483 0.67 0.842128
Target:  5'- --aGCCGcagGCCGgcGCGCGGCCG-CUUu -3'
miRNA:   3'- uaaCGGUa--CGGUa-UGUGCCGGCaGAA- -5'
23562 3' -54.8 NC_005261.1 + 59839 0.71 0.633686
Target:  5'- -cUGCCAgcagagggcgGCCAUGCGCGGgaCGUCg- -3'
miRNA:   3'- uaACGGUa---------CGGUAUGUGCCg-GCAGaa -5'
23562 3' -54.8 NC_005261.1 + 60804 0.66 0.866506
Target:  5'- --cGaCCAgcugGUUGUACugGGCCGUCg- -3'
miRNA:   3'- uaaC-GGUa---CGGUAUGugCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 63553 0.74 0.478027
Target:  5'- --cGCCGUGCCcgcugGCGCGGCCGg--- -3'
miRNA:   3'- uaaCGGUACGGua---UGUGCCGGCagaa -5'
23562 3' -54.8 NC_005261.1 + 64123 0.67 0.850472
Target:  5'- --gGCaCGUGCC--GCGCGGCCGcCa- -3'
miRNA:   3'- uaaCG-GUACGGuaUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 67458 0.67 0.8586
Target:  5'- --cGCCuucucGCCGUGCAUGGCC-UCa- -3'
miRNA:   3'- uaaCGGua---CGGUAUGUGCCGGcAGaa -5'
23562 3' -54.8 NC_005261.1 + 67530 0.66 0.874183
Target:  5'- --gGCCGUGCCc-GCGCGGgCCGcgCUg -3'
miRNA:   3'- uaaCGGUACGGuaUGUGCC-GGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 68616 0.66 0.902488
Target:  5'- --cGCCGUGCCGggcggcgggcGCGCGGUCGa--- -3'
miRNA:   3'- uaaCGGUACGGUa---------UGUGCCGGCagaa -5'
23562 3' -54.8 NC_005261.1 + 75816 0.67 0.8586
Target:  5'- --cGCUgGUGCCcgGCGCGGCCG-Cg- -3'
miRNA:   3'- uaaCGG-UACGGuaUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 77233 0.66 0.902488
Target:  5'- -aUGCCGgaGCCGgagGCGCGGgCGUUg- -3'
miRNA:   3'- uaACGGUa-CGGUa--UGUGCCgGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 81307 0.66 0.895782
Target:  5'- --cGuCCGUGCCGUuguCGgGGUCGUCg- -3'
miRNA:   3'- uaaC-GGUACGGUAu--GUgCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 81797 0.66 0.888826
Target:  5'- uAUUGCCAagcgaGCCGcUGCGCGGCgGUg-- -3'
miRNA:   3'- -UAACGGUa----CGGU-AUGUGCCGgCAgaa -5'
23562 3' -54.8 NC_005261.1 + 84576 0.68 0.778416
Target:  5'- --gGCC---CCGUAgACGGCCGUCUg -3'
miRNA:   3'- uaaCGGuacGGUAUgUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 84680 0.67 0.824829
Target:  5'- --cGCCuggGCCGcgGCGCGGCCGa--- -3'
miRNA:   3'- uaaCGGua-CGGUa-UGUGCCGGCagaa -5'
23562 3' -54.8 NC_005261.1 + 85790 0.68 0.80677
Target:  5'- --cGCCGUcGCUggGCagACGGCCGUCg- -3'
miRNA:   3'- uaaCGGUA-CGGuaUG--UGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 89401 0.67 0.8586
Target:  5'- -cUGCCGccgGCCuuccucggcgcGUGCGCGGCCGcCg- -3'
miRNA:   3'- uaACGGUa--CGG-----------UAUGUGCCGGCaGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.