miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 3' -54.8 NC_005261.1 + 3474 0.66 0.881624
Target:  5'- --cGCCAUGCCGccgcggguCGCGgguGCCGUCg- -3'
miRNA:   3'- uaaCGGUACGGUau------GUGC---CGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 6279 0.7 0.664569
Target:  5'- --cGCCAaacucauUGUaaUAUGCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGU-------ACG--GUAUGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 8823 0.67 0.842128
Target:  5'- --cGCUuuauUGCgCGU-CGCGGCCGUCUc -3'
miRNA:   3'- uaaCGGu---ACG-GUAuGUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 12520 0.66 0.888826
Target:  5'- --aGCCGaGCCcgcgGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUaCGGuaugUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 15334 0.68 0.81589
Target:  5'- --aGCCGUGCaCAaACGCGGCCa---- -3'
miRNA:   3'- uaaCGGUACG-GUaUGUGCCGGcagaa -5'
23562 3' -54.8 NC_005261.1 + 17006 0.66 0.902488
Target:  5'- --cGCCAgcaUGUCGcACGCGGCCGcgCUc -3'
miRNA:   3'- uaaCGGU---ACGGUaUGUGCCGGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 20179 0.67 0.8586
Target:  5'- -cUGCCGcgGCCGccaGCGCGGgCGUCg- -3'
miRNA:   3'- uaACGGUa-CGGUa--UGUGCCgGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 20563 0.67 0.833578
Target:  5'- --gGCCcgGCCGgGCGCGGCgGggcgCUUa -3'
miRNA:   3'- uaaCGGuaCGGUaUGUGCCGgCa---GAA- -5'
23562 3' -54.8 NC_005261.1 + 25195 0.68 0.80677
Target:  5'- --cGCCAcGCCGcGCGCGGcCCGcUCUg -3'
miRNA:   3'- uaaCGGUaCGGUaUGUGCC-GGC-AGAa -5'
23562 3' -54.8 NC_005261.1 + 28277 0.69 0.738669
Target:  5'- uGUUGCCGccGCCGcggcCGCGGUCGUCUc -3'
miRNA:   3'- -UAACGGUa-CGGUau--GUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 29342 0.69 0.738669
Target:  5'- --cGCCGgcggGCa--GCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUa---CGguaUGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 29814 0.67 0.847991
Target:  5'- gGUUGCCGUGCacgcaggcgcggugGCGCGGCUG-CUg -3'
miRNA:   3'- -UAACGGUACGgua-----------UGUGCCGGCaGAa -5'
23562 3' -54.8 NC_005261.1 + 31684 0.66 0.874183
Target:  5'- --cGCCG-GCCcggACGCGGCCGcCg- -3'
miRNA:   3'- uaaCGGUaCGGua-UGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 31843 0.72 0.549052
Target:  5'- --cGCCGUGCUGgccuCGCGGCgCGUCUUc -3'
miRNA:   3'- uaaCGGUACGGUau--GUGCCG-GCAGAA- -5'
23562 3' -54.8 NC_005261.1 + 32221 0.67 0.847991
Target:  5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3'
miRNA:   3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 32886 0.67 0.842128
Target:  5'- --gGCC-UGCCu--CACGGCCGUg-- -3'
miRNA:   3'- uaaCGGuACGGuauGUGCCGGCAgaa -5'
23562 3' -54.8 NC_005261.1 + 37903 0.68 0.81589
Target:  5'- --gGCCAUGCCcUACGCGcGCCa---- -3'
miRNA:   3'- uaaCGGUACGGuAUGUGC-CGGcagaa -5'
23562 3' -54.8 NC_005261.1 + 39898 0.68 0.80677
Target:  5'- --gGCUGUGCagcuggcgcGCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUACGgua------UGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 43582 0.69 0.728454
Target:  5'- --cGCUucGCCGUGCGCGacGCCGUCUc -3'
miRNA:   3'- uaaCGGuaCGGUAUGUGC--CGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 45278 0.66 0.902488
Target:  5'- --cGCCGugcUGCCGUAC-CGGCUGgcCUUg -3'
miRNA:   3'- uaaCGGU---ACGGUAUGuGCCGGCa-GAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.