Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 3' | -54.8 | NC_005261.1 | + | 3474 | 0.66 | 0.881624 |
Target: 5'- --cGCCAUGCCGccgcggguCGCGgguGCCGUCg- -3' miRNA: 3'- uaaCGGUACGGUau------GUGC---CGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 6279 | 0.7 | 0.664569 |
Target: 5'- --cGCCAaacucauUGUaaUAUGCGCGGCCGUCg- -3' miRNA: 3'- uaaCGGU-------ACG--GUAUGUGCCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 8823 | 0.67 | 0.842128 |
Target: 5'- --cGCUuuauUGCgCGU-CGCGGCCGUCUc -3' miRNA: 3'- uaaCGGu---ACG-GUAuGUGCCGGCAGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 12520 | 0.66 | 0.888826 |
Target: 5'- --aGCCGaGCCcgcgGCGGCCGUCg- -3' miRNA: 3'- uaaCGGUaCGGuaugUGCCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 15334 | 0.68 | 0.81589 |
Target: 5'- --aGCCGUGCaCAaACGCGGCCa---- -3' miRNA: 3'- uaaCGGUACG-GUaUGUGCCGGcagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 17006 | 0.66 | 0.902488 |
Target: 5'- --cGCCAgcaUGUCGcACGCGGCCGcgCUc -3' miRNA: 3'- uaaCGGU---ACGGUaUGUGCCGGCa-GAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 20179 | 0.67 | 0.8586 |
Target: 5'- -cUGCCGcgGCCGccaGCGCGGgCGUCg- -3' miRNA: 3'- uaACGGUa-CGGUa--UGUGCCgGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 20563 | 0.67 | 0.833578 |
Target: 5'- --gGCCcgGCCGgGCGCGGCgGggcgCUUa -3' miRNA: 3'- uaaCGGuaCGGUaUGUGCCGgCa---GAA- -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 25195 | 0.68 | 0.80677 |
Target: 5'- --cGCCAcGCCGcGCGCGGcCCGcUCUg -3' miRNA: 3'- uaaCGGUaCGGUaUGUGCC-GGC-AGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 28277 | 0.69 | 0.738669 |
Target: 5'- uGUUGCCGccGCCGcggcCGCGGUCGUCUc -3' miRNA: 3'- -UAACGGUa-CGGUau--GUGCCGGCAGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 29342 | 0.69 | 0.738669 |
Target: 5'- --cGCCGgcggGCa--GCGCGGCCGUCg- -3' miRNA: 3'- uaaCGGUa---CGguaUGUGCCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 29814 | 0.67 | 0.847991 |
Target: 5'- gGUUGCCGUGCacgcaggcgcggugGCGCGGCUG-CUg -3' miRNA: 3'- -UAACGGUACGgua-----------UGUGCCGGCaGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 31684 | 0.66 | 0.874183 |
Target: 5'- --cGCCG-GCCcggACGCGGCCGcCg- -3' miRNA: 3'- uaaCGGUaCGGua-UGUGCCGGCaGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 31843 | 0.72 | 0.549052 |
Target: 5'- --cGCCGUGCUGgccuCGCGGCgCGUCUUc -3' miRNA: 3'- uaaCGGUACGGUau--GUGCCG-GCAGAA- -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 32221 | 0.67 | 0.847991 |
Target: 5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3' miRNA: 3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 32886 | 0.67 | 0.842128 |
Target: 5'- --gGCC-UGCCu--CACGGCCGUg-- -3' miRNA: 3'- uaaCGGuACGGuauGUGCCGGCAgaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 37903 | 0.68 | 0.81589 |
Target: 5'- --gGCCAUGCCcUACGCGcGCCa---- -3' miRNA: 3'- uaaCGGUACGGuAUGUGC-CGGcagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 39898 | 0.68 | 0.80677 |
Target: 5'- --gGCUGUGCagcuggcgcGCGCGGCCGUCg- -3' miRNA: 3'- uaaCGGUACGgua------UGUGCCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 43582 | 0.69 | 0.728454 |
Target: 5'- --cGCUucGCCGUGCGCGacGCCGUCUc -3' miRNA: 3'- uaaCGGuaCGGUAUGUGC--CGGCAGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 45278 | 0.66 | 0.902488 |
Target: 5'- --cGCCGugcUGCCGUAC-CGGCUGgcCUUg -3' miRNA: 3'- uaaCGGU---ACGGUAUGuGCCGGCa-GAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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