miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 3' -54.8 NC_005261.1 + 52424 0.66 0.874183
Target:  5'- --cGCUGgacCCGUACucgACGGCCGUCUg -3'
miRNA:   3'- uaaCGGUac-GGUAUG---UGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 8823 0.67 0.842128
Target:  5'- --cGCUuuauUGCgCGU-CGCGGCCGUCUc -3'
miRNA:   3'- uaaCGGu---ACG-GUAuGUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 29814 0.67 0.847991
Target:  5'- gGUUGCCGUGCacgcaggcgcggugGCGCGGCUG-CUg -3'
miRNA:   3'- -UAACGGUACGgua-----------UGUGCCGGCaGAa -5'
23562 3' -54.8 NC_005261.1 + 136738 0.67 0.847991
Target:  5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3'
miRNA:   3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 67458 0.67 0.8586
Target:  5'- --cGCCuucucGCCGUGCAUGGCC-UCa- -3'
miRNA:   3'- uaaCGGua---CGGUAUGUGCCGGcAGaa -5'
23562 3' -54.8 NC_005261.1 + 20179 0.67 0.8586
Target:  5'- -cUGCCGcgGCCGccaGCGCGGgCGUCg- -3'
miRNA:   3'- uaACGGUa-CGGUa--UGUGCCgGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 60804 0.66 0.866506
Target:  5'- --cGaCCAgcugGUUGUACugGGCCGUCg- -3'
miRNA:   3'- uaaC-GGUa---CGGUAUGugCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 67530 0.66 0.874183
Target:  5'- --gGCCGUGCCc-GCGCGGgCCGcgCUg -3'
miRNA:   3'- uaaCGGUACGGuaUGUGCC-GGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 31684 0.66 0.874183
Target:  5'- --cGCCG-GCCcggACGCGGCCGcCg- -3'
miRNA:   3'- uaaCGGUaCGGua-UGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 32886 0.67 0.842128
Target:  5'- --gGCC-UGCCu--CACGGCCGUg-- -3'
miRNA:   3'- uaaCGGuACGGuauGUGCCGGCAgaa -5'
23562 3' -54.8 NC_005261.1 + 20563 0.67 0.833578
Target:  5'- --gGCCcgGCCGgGCGCGGCgGggcgCUUa -3'
miRNA:   3'- uaaCGGuaCGGUaUGUGCCGgCa---GAA- -5'
23562 3' -54.8 NC_005261.1 + 91950 0.67 0.830102
Target:  5'- cGUUGCCcgGCCAgagcgccccggggACACGGUCG-Cg- -3'
miRNA:   3'- -UAACGGuaCGGUa------------UGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 136360 0.72 0.549052
Target:  5'- --cGCCGUGCUGgccuCGCGGCgCGUCUUc -3'
miRNA:   3'- uaaCGGUACGGUau--GUGCCG-GCAGAA- -5'
23562 3' -54.8 NC_005261.1 + 92741 0.71 0.623022
Target:  5'- --aGCCG-GCCAUGCACauGGCCGUgUUc -3'
miRNA:   3'- uaaCGGUaCGGUAUGUG--CCGGCAgAA- -5'
23562 3' -54.8 NC_005261.1 + 110796 0.7 0.664569
Target:  5'- --cGCCAaacucauUGUaaUAUGCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGU-------ACG--GUAUGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 29342 0.69 0.738669
Target:  5'- --cGCCGgcggGCa--GCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUa---CGguaUGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 132794 0.69 0.738669
Target:  5'- uGUUGCCGccGCCGcggcCGCGGUCGUCUc -3'
miRNA:   3'- -UAACGGUa-CGGUau--GUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 106501 0.68 0.778416
Target:  5'- --gGCCggGCCAUcGCGCGGCCaGUUc- -3'
miRNA:   3'- uaaCGGuaCGGUA-UGUGCCGG-CAGaa -5'
23562 3' -54.8 NC_005261.1 + 25195 0.68 0.80677
Target:  5'- --cGCCAcGCCGcGCGCGGcCCGcUCUg -3'
miRNA:   3'- uaaCGGUaCGGUaUGUGCC-GGC-AGAa -5'
23562 3' -54.8 NC_005261.1 + 84680 0.67 0.824829
Target:  5'- --cGCCuggGCCGcgGCGCGGCCGa--- -3'
miRNA:   3'- uaaCGGua-CGGUa-UGUGCCGGCagaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.