miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 3' -54.8 NC_005261.1 + 106501 0.68 0.778416
Target:  5'- --gGCCggGCCAUcGCGCGGCCaGUUc- -3'
miRNA:   3'- uaaCGGuaCGGUA-UGUGCCGG-CAGaa -5'
23562 3' -54.8 NC_005261.1 + 25195 0.68 0.80677
Target:  5'- --cGCCAcGCCGcGCGCGGcCCGcUCUg -3'
miRNA:   3'- uaaCGGUaCGGUaUGUGCC-GGC-AGAa -5'
23562 3' -54.8 NC_005261.1 + 84680 0.67 0.824829
Target:  5'- --cGCCuggGCCGcgGCGCGGCCGa--- -3'
miRNA:   3'- uaaCGGua-CGGUa-UGUGCCGGCagaa -5'
23562 3' -54.8 NC_005261.1 + 91950 0.67 0.830102
Target:  5'- cGUUGCCcgGCCAgagcgccccggggACACGGUCG-Cg- -3'
miRNA:   3'- -UAACGGuaCGGUa------------UGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 20563 0.67 0.833578
Target:  5'- --gGCCcgGCCGgGCGCGGCgGggcgCUUa -3'
miRNA:   3'- uaaCGGuaCGGUaUGUGCCGgCa---GAA- -5'
23562 3' -54.8 NC_005261.1 + 107945 0.67 0.8586
Target:  5'- --cGCCAcguaGuCCGUGCGCGGCCG-Cg- -3'
miRNA:   3'- uaaCGGUa---C-GGUAUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 89401 0.67 0.8586
Target:  5'- -cUGCCGccgGCCuuccucggcgcGUGCGCGGCCGcCg- -3'
miRNA:   3'- uaACGGUa--CGG-----------UAUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 75816 0.67 0.8586
Target:  5'- --cGCUgGUGCCcgGCGCGGCCG-Cg- -3'
miRNA:   3'- uaaCGG-UACGGuaUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 132834 0.67 0.850472
Target:  5'- --cGCUuucGUCG-ACGCGGCCGUCUa -3'
miRNA:   3'- uaaCGGua-CGGUaUGUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 64123 0.67 0.850472
Target:  5'- --gGCaCGUGCC--GCGCGGCCGcCa- -3'
miRNA:   3'- uaaCG-GUACGGuaUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 32221 0.67 0.847991
Target:  5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3'
miRNA:   3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 98765 0.66 0.874183
Target:  5'- gGUUGCCGcUGCCGccGC-CGGCCGcCg- -3'
miRNA:   3'- -UAACGGU-ACGGUa-UGuGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 50511 0.66 0.881624
Target:  5'- --cGCCcaGCCAgcgcaGCAgGGCCGUCg- -3'
miRNA:   3'- uaaCGGuaCGGUa----UGUgCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 48795 0.66 0.881624
Target:  5'- --cGCCGgcuccgugagGCCGUGCGCGG-CGUCc- -3'
miRNA:   3'- uaaCGGUa---------CGGUAUGUGCCgGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 81797 0.66 0.888826
Target:  5'- uAUUGCCAagcgaGCCGcUGCGCGGCgGUg-- -3'
miRNA:   3'- -UAACGGUa----CGGU-AUGUGCCGgCAgaa -5'
23562 3' -54.8 NC_005261.1 + 81307 0.66 0.895782
Target:  5'- --cGuCCGUGCCGUuguCGgGGUCGUCg- -3'
miRNA:   3'- uaaC-GGUACGGUAu--GUgCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 17006 0.66 0.902488
Target:  5'- --cGCCAgcaUGUCGcACGCGGCCGcgCUc -3'
miRNA:   3'- uaaCGGU---ACGGUaUGUGCCGGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 45278 0.66 0.902488
Target:  5'- --cGCCGugcUGCCGUAC-CGGCUGgcCUUg -3'
miRNA:   3'- uaaCGGU---ACGGUAUGuGCCGGCa-GAA- -5'
23562 3' -54.8 NC_005261.1 + 102683 0.66 0.902488
Target:  5'- --cGCCGcGUCcgcCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUaCGGuauGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 128971 1.04 0.005427
Target:  5'- uAUUGCCAUGCCAUACACGGCCGUCUUg -3'
miRNA:   3'- -UAACGGUACGGUAUGUGCCGGCAGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.