Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 3' | -54.8 | NC_005261.1 | + | 43582 | 0.69 | 0.728454 |
Target: 5'- --cGCUucGCCGUGCGCGacGCCGUCUc -3' miRNA: 3'- uaaCGGuaCGGUAUGUGC--CGGCAGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 28277 | 0.69 | 0.738669 |
Target: 5'- uGUUGCCGccGCCGcggcCGCGGUCGUCUc -3' miRNA: 3'- -UAACGGUa-CGGUau--GUGCCGGCAGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 15334 | 0.68 | 0.81589 |
Target: 5'- --aGCCGUGCaCAaACGCGGCCa---- -3' miRNA: 3'- uaaCGGUACG-GUaUGUGCCGGcagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 135223 | 0.67 | 0.833578 |
Target: 5'- --gGCCAcgGCCGaGCGCGucgccGCCGUCUUu -3' miRNA: 3'- uaaCGGUa-CGGUaUGUGC-----CGGCAGAA- -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 128971 | 1.04 | 0.005427 |
Target: 5'- uAUUGCCAUGCCAUACACGGCCGUCUUg -3' miRNA: 3'- -UAACGGUACGGUAUGUGCCGGCAGAA- -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 59839 | 0.71 | 0.633686 |
Target: 5'- -cUGCCAgcagagggcgGCCAUGCGCGGgaCGUCg- -3' miRNA: 3'- uaACGGUa---------CGGUAUGUGCCg-GCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 39898 | 0.68 | 0.80677 |
Target: 5'- --gGCUGUGCagcuggcgcGCGCGGCCGUCg- -3' miRNA: 3'- uaaCGGUACGgua------UGUGCCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 58483 | 0.67 | 0.842128 |
Target: 5'- --aGCCGcagGCCGgcGCGCGGCCG-CUUu -3' miRNA: 3'- uaaCGGUa--CGGUa-UGUGCCGGCaGAA- -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 6279 | 0.7 | 0.664569 |
Target: 5'- --cGCCAaacucauUGUaaUAUGCGCGGCCGUCg- -3' miRNA: 3'- uaaCGGU-------ACG--GUAUGUGCCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 119127 | 0.67 | 0.842128 |
Target: 5'- --gGCCGcgGCCGcgGCGCGGCCaUCUc -3' miRNA: 3'- uaaCGGUa-CGGUa-UGUGCCGGcAGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 84576 | 0.68 | 0.778416 |
Target: 5'- --gGCC---CCGUAgACGGCCGUCUg -3' miRNA: 3'- uaaCGGuacGGUAUgUGCCGGCAGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 110503 | 0.69 | 0.718149 |
Target: 5'- --aGCUG-GCCAgcguCACGGCCGUCg- -3' miRNA: 3'- uaaCGGUaCGGUau--GUGCCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 51803 | 0.68 | 0.80677 |
Target: 5'- --gGCCAUGCuCGUGCuGCGGCUGgugCg- -3' miRNA: 3'- uaaCGGUACG-GUAUG-UGCCGGCa--Gaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 85790 | 0.68 | 0.80677 |
Target: 5'- --cGCCGUcGCUggGCagACGGCCGUCg- -3' miRNA: 3'- uaaCGGUA-CGGuaUG--UGCCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 37903 | 0.68 | 0.81589 |
Target: 5'- --gGCCAUGCCcUACGCGcGCCa---- -3' miRNA: 3'- uaaCGGUACGGuAUGUGC-CGGcagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 109126 | 0.68 | 0.81589 |
Target: 5'- --gGCgGUGUCGUGCGCGGCCc---- -3' miRNA: 3'- uaaCGgUACGGUAUGUGCCGGcagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 63553 | 0.74 | 0.478027 |
Target: 5'- --cGCCGUGCCcgcugGCGCGGCCGg--- -3' miRNA: 3'- uaaCGGUACGGua---UGUGCCGGCagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 98685 | 0.72 | 0.569987 |
Target: 5'- --cGCCGggGCCGgagGCGCGGCCGgagCUg -3' miRNA: 3'- uaaCGGUa-CGGUa--UGUGCCGGCa--GAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 125693 | 0.67 | 0.842128 |
Target: 5'- uUUGCCGggcuugGCCcgGCgACGGCCGcCg- -3' miRNA: 3'- uAACGGUa-----CGGuaUG-UGCCGGCaGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 136738 | 0.67 | 0.847991 |
Target: 5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3' miRNA: 3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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