miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 3' -54.8 NC_005261.1 + 43582 0.69 0.728454
Target:  5'- --cGCUucGCCGUGCGCGacGCCGUCUc -3'
miRNA:   3'- uaaCGGuaCGGUAUGUGC--CGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 28277 0.69 0.738669
Target:  5'- uGUUGCCGccGCCGcggcCGCGGUCGUCUc -3'
miRNA:   3'- -UAACGGUa-CGGUau--GUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 15334 0.68 0.81589
Target:  5'- --aGCCGUGCaCAaACGCGGCCa---- -3'
miRNA:   3'- uaaCGGUACG-GUaUGUGCCGGcagaa -5'
23562 3' -54.8 NC_005261.1 + 135223 0.67 0.833578
Target:  5'- --gGCCAcgGCCGaGCGCGucgccGCCGUCUUu -3'
miRNA:   3'- uaaCGGUa-CGGUaUGUGC-----CGGCAGAA- -5'
23562 3' -54.8 NC_005261.1 + 128971 1.04 0.005427
Target:  5'- uAUUGCCAUGCCAUACACGGCCGUCUUg -3'
miRNA:   3'- -UAACGGUACGGUAUGUGCCGGCAGAA- -5'
23562 3' -54.8 NC_005261.1 + 59839 0.71 0.633686
Target:  5'- -cUGCCAgcagagggcgGCCAUGCGCGGgaCGUCg- -3'
miRNA:   3'- uaACGGUa---------CGGUAUGUGCCg-GCAGaa -5'
23562 3' -54.8 NC_005261.1 + 39898 0.68 0.80677
Target:  5'- --gGCUGUGCagcuggcgcGCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUACGgua------UGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 58483 0.67 0.842128
Target:  5'- --aGCCGcagGCCGgcGCGCGGCCG-CUUu -3'
miRNA:   3'- uaaCGGUa--CGGUa-UGUGCCGGCaGAA- -5'
23562 3' -54.8 NC_005261.1 + 6279 0.7 0.664569
Target:  5'- --cGCCAaacucauUGUaaUAUGCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGU-------ACG--GUAUGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 119127 0.67 0.842128
Target:  5'- --gGCCGcgGCCGcgGCGCGGCCaUCUc -3'
miRNA:   3'- uaaCGGUa-CGGUa-UGUGCCGGcAGAa -5'
23562 3' -54.8 NC_005261.1 + 84576 0.68 0.778416
Target:  5'- --gGCC---CCGUAgACGGCCGUCUg -3'
miRNA:   3'- uaaCGGuacGGUAUgUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 110503 0.69 0.718149
Target:  5'- --aGCUG-GCCAgcguCACGGCCGUCg- -3'
miRNA:   3'- uaaCGGUaCGGUau--GUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 51803 0.68 0.80677
Target:  5'- --gGCCAUGCuCGUGCuGCGGCUGgugCg- -3'
miRNA:   3'- uaaCGGUACG-GUAUG-UGCCGGCa--Gaa -5'
23562 3' -54.8 NC_005261.1 + 85790 0.68 0.80677
Target:  5'- --cGCCGUcGCUggGCagACGGCCGUCg- -3'
miRNA:   3'- uaaCGGUA-CGGuaUG--UGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 37903 0.68 0.81589
Target:  5'- --gGCCAUGCCcUACGCGcGCCa---- -3'
miRNA:   3'- uaaCGGUACGGuAUGUGC-CGGcagaa -5'
23562 3' -54.8 NC_005261.1 + 109126 0.68 0.81589
Target:  5'- --gGCgGUGUCGUGCGCGGCCc---- -3'
miRNA:   3'- uaaCGgUACGGUAUGUGCCGGcagaa -5'
23562 3' -54.8 NC_005261.1 + 63553 0.74 0.478027
Target:  5'- --cGCCGUGCCcgcugGCGCGGCCGg--- -3'
miRNA:   3'- uaaCGGUACGGua---UGUGCCGGCagaa -5'
23562 3' -54.8 NC_005261.1 + 98685 0.72 0.569987
Target:  5'- --cGCCGggGCCGgagGCGCGGCCGgagCUg -3'
miRNA:   3'- uaaCGGUa-CGGUa--UGUGCCGGCa--GAa -5'
23562 3' -54.8 NC_005261.1 + 125693 0.67 0.842128
Target:  5'- uUUGCCGggcuugGCCcgGCgACGGCCGcCg- -3'
miRNA:   3'- uAACGGUa-----CGGuaUG-UGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 136738 0.67 0.847991
Target:  5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3'
miRNA:   3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.