miRNA display CGI


Results 81 - 100 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 67176 0.69 0.981598
Target:  5'- --------cGCGCG-GCGGCUgGCCCa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGA-CGGGc -5'
23562 5' -49.5 NC_005261.1 + 95551 0.69 0.981598
Target:  5'- --------cGCGCGgcugccgGCGGCgGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCa------CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 14795 0.69 0.981598
Target:  5'- -------aUGCGCGagcUGCGGCUgcgGCCCGu -3'
miRNA:   3'- ccuuuuaaAUGUGC---ACGCCGA---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67500 0.68 0.983454
Target:  5'- cGAGGAggcGCACGUGCuggacgugcucucGGCcgUGCCCGc -3'
miRNA:   3'- cCUUUUaaaUGUGCACG-------------CCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68955 0.68 0.983651
Target:  5'- cGGGGucg--GCGCGgGCGGCUcGCCgGg -3'
miRNA:   3'- -CCUUuuaaaUGUGCaCGCCGA-CGGgC- -5'
23562 5' -49.5 NC_005261.1 + 80676 0.68 0.983651
Target:  5'- cGGAGccgg-GCGCGUGCGaCgugUGCCCGu -3'
miRNA:   3'- -CCUUuuaaaUGUGCACGCcG---ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 108550 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 6133 0.68 0.985526
Target:  5'- --------aGCGCGUcGCGGCcGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCA-CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 8812 0.68 0.985526
Target:  5'- gGGAuaGAAUacgcuuuaUUGCGCGUcGCGGCcgucucacaGCCCGg -3'
miRNA:   3'- -CCU--UUUA--------AAUGUGCA-CGCCGa--------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 50475 0.66 0.996554
Target:  5'- cGAGGAcgcuCGCGUccGCGGCgGCCCc -3'
miRNA:   3'- cCUUUUaaauGUGCA--CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 32368 0.66 0.997087
Target:  5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 63840 0.66 0.997087
Target:  5'- --------gGCGCGccaccUGCaGCUGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUGC-----ACGcCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 81970 0.66 0.997087
Target:  5'- --------aGCGCGguguucgGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCa------CGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 29415 0.66 0.997087
Target:  5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 95159 0.66 0.997549
Target:  5'- cGGGAAcc-UGCA-GUGCGGCgagggggacgUGCCCc -3'
miRNA:   3'- -CCUUUuaaAUGUgCACGCCG----------ACGGGc -5'
23562 5' -49.5 NC_005261.1 + 97961 0.66 0.997549
Target:  5'- aGGGAGGUggcgGCGgaGCGG-UGCCCGg -3'
miRNA:   3'- -CCUUUUAaaugUGCa-CGCCgACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 78833 0.66 0.997549
Target:  5'- cGGGAGcugcggUACGcCG-GCGGC-GCCCGc -3'
miRNA:   3'- -CCUUUuaa---AUGU-GCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 7195 0.66 0.997949
Target:  5'- aGGggGGggUGCGCGUGCguGGCaGCg-- -3'
miRNA:   3'- -CCuuUUaaAUGUGCACG--CCGaCGggc -5'
23562 5' -49.5 NC_005261.1 + 31775 0.66 0.997949
Target:  5'- -------cUGCGCGccGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 129006 1.12 0.007951
Target:  5'- gGGAAAAUUUACACGUGCGGCUGCCCGu -3'
miRNA:   3'- -CCUUUUAAAUGUGCACGCCGACGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.