miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 60405 0.69 0.979357
Target:  5'- aGGggGGgcgguggUGCugGgGCGGCaGCUCGg -3'
miRNA:   3'- -CCuuUUaa-----AUGugCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 73246 0.69 0.979357
Target:  5'- uGGAGcaccUGCACGcgcUGCGGCgGCUCGu -3'
miRNA:   3'- -CCUUuuaaAUGUGC---ACGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 8812 0.68 0.985526
Target:  5'- gGGAuaGAAUacgcuuuaUUGCGCGUcGCGGCcgucucacaGCCCGg -3'
miRNA:   3'- -CCU--UUUA--------AAUGUGCA-CGCCGa--------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 73533 0.68 0.985526
Target:  5'- -------gUGCGCG-GCGGCgGCCCc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 134429 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 95935 0.68 0.986737
Target:  5'- uGGGAGGUgcugggcgacaucuCGCG-GCGGCUGCUgGg -3'
miRNA:   3'- -CCUUUUAaau-----------GUGCaCGCCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 22943 0.68 0.988779
Target:  5'- --------gACGCGuUGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGC-ACGCCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 30916 0.68 0.988779
Target:  5'- uGGgcGAgcUGCACGcgGCGGCcugGCCgCGg -3'
miRNA:   3'- -CCuuUUaaAUGUGCa-CGCCGa--CGG-GC- -5'
23562 5' -49.5 NC_005261.1 + 31293 0.68 0.988779
Target:  5'- gGGccGAggUGCGCGUGUcgcuGGCgGCCCu -3'
miRNA:   3'- -CCuuUUaaAUGUGCACG----CCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 44368 0.68 0.988779
Target:  5'- uGGAAGGagUGCGCGcgccucGUGGaCUGCUCGg -3'
miRNA:   3'- -CCUUUUaaAUGUGCa-----CGCC-GACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 6133 0.68 0.985526
Target:  5'- --------aGCGCGUcGCGGCcGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCA-CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 108550 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 94208 0.69 0.979357
Target:  5'- --------cGCGCG-GCGGCcGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 41273 0.69 0.981598
Target:  5'- --------cGCGCccgGCGGCUGCCCc -3'
miRNA:   3'- ccuuuuaaaUGUGca-CGCCGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 67176 0.69 0.981598
Target:  5'- --------cGCGCG-GCGGCUgGCCCa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGA-CGGGc -5'
23562 5' -49.5 NC_005261.1 + 95551 0.69 0.981598
Target:  5'- --------cGCGCGgcugccgGCGGCgGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCa------CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 14795 0.69 0.981598
Target:  5'- -------aUGCGCGagcUGCGGCUgcgGCCCGu -3'
miRNA:   3'- ccuuuuaaAUGUGC---ACGCCGA---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67500 0.68 0.983454
Target:  5'- cGAGGAggcGCACGUGCuggacgugcucucGGCcgUGCCCGc -3'
miRNA:   3'- cCUUUUaaaUGUGCACG-------------CCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68955 0.68 0.983651
Target:  5'- cGGGGucg--GCGCGgGCGGCUcGCCgGg -3'
miRNA:   3'- -CCUUuuaaaUGUGCaCGCCGA-CGGgC- -5'
23562 5' -49.5 NC_005261.1 + 80676 0.68 0.983651
Target:  5'- cGGAGccgg-GCGCGUGCGaCgugUGCCCGu -3'
miRNA:   3'- -CCUUuuaaaUGUGCACGCcG---ACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.