miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 50087 0.69 0.97692
Target:  5'- --cAGAUgacCACGUGCacGCUGCCCGc -3'
miRNA:   3'- ccuUUUAaauGUGCACGc-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 50444 0.67 0.993564
Target:  5'- -------gUGCGCGUGaaGCUGCgCCGg -3'
miRNA:   3'- ccuuuuaaAUGUGCACgcCGACG-GGC- -5'
23562 5' -49.5 NC_005261.1 + 50475 0.66 0.996554
Target:  5'- cGAGGAcgcuCGCGUccGCGGCgGCCCc -3'
miRNA:   3'- cCUUUUaaauGUGCA--CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 51001 0.67 0.994457
Target:  5'- cGAGGcggUGCGCGUGCcGCUGuacCCCGu -3'
miRNA:   3'- cCUUUuaaAUGUGCACGcCGAC---GGGC- -5'
23562 5' -49.5 NC_005261.1 + 51801 0.67 0.994287
Target:  5'- uGGAccaccugGCgaugGCGUGCGGguuCUGCCCGc -3'
miRNA:   3'- -CCUuuuaaa-UG----UGCACGCC---GACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 54638 0.68 0.988779
Target:  5'- cGGAGAGcg-ACGCGcUGCuGGCgGCCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGUGC-ACG-CCGaCGG-GC- -5'
23562 5' -49.5 NC_005261.1 + 55540 0.69 0.974278
Target:  5'- uGGGGA----GCGCG-GCGGUggcGCCCGa -3'
miRNA:   3'- -CCUUUuaaaUGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 57700 0.66 0.997949
Target:  5'- --------aGCACGUGaCGGUgGCCUGg -3'
miRNA:   3'- ccuuuuaaaUGUGCAC-GCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 57916 0.79 0.572962
Target:  5'- cGGAAGAcggcccGCACGcGCGuGCUGCCCGg -3'
miRNA:   3'- -CCUUUUaaa---UGUGCaCGC-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 58064 0.7 0.957721
Target:  5'- aGAGGGUg-ACGCGgacgGCGGCgccaggGCCCGc -3'
miRNA:   3'- cCUUUUAaaUGUGCa---CGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 59073 0.68 0.987232
Target:  5'- cGGAGA----GCGCGcGCGGgUGCgCCGc -3'
miRNA:   3'- -CCUUUuaaaUGUGCaCGCCgACG-GGC- -5'
23562 5' -49.5 NC_005261.1 + 59997 0.66 0.997549
Target:  5'- --------cGCACGccUGCGGCUGCUg- -3'
miRNA:   3'- ccuuuuaaaUGUGC--ACGCCGACGGgc -5'
23562 5' -49.5 NC_005261.1 + 60405 0.69 0.979357
Target:  5'- aGGggGGgcgguggUGCugGgGCGGCaGCUCGg -3'
miRNA:   3'- -CCuuUUaa-----AUGugCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 62975 0.66 0.996554
Target:  5'- cGAAGGccgagUACGC--GCGGUUGCCCa -3'
miRNA:   3'- cCUUUUaa---AUGUGcaCGCCGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 63782 0.7 0.961501
Target:  5'- aGGuccacgUGCGCGcGCGGCUGCgUGa -3'
miRNA:   3'- -CCuuuuaaAUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 63840 0.66 0.997087
Target:  5'- --------gGCGCGccaccUGCaGCUGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUGC-----ACGcCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 64773 0.69 0.974278
Target:  5'- aGGggGGgcgcgcggACGCGgacGCGGCcgGCCUGg -3'
miRNA:   3'- -CCuuUUaaa-----UGUGCa--CGCCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67121 0.73 0.87785
Target:  5'- --------cGCGCaGUGCGGCgGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUG-CACGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67176 0.69 0.981598
Target:  5'- --------cGCGCG-GCGGCUgGCCCa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGA-CGGGc -5'
23562 5' -49.5 NC_005261.1 + 67394 0.7 0.968346
Target:  5'- uGGAGGAggcgUACGCGcGCgccGGCgcGCCCGg -3'
miRNA:   3'- -CCUUUUaa--AUGUGCaCG---CCGa-CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.