miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 90190 0.67 0.995247
Target:  5'- gGGAGGAcgcagggaGCGCGgggGCGGCggagcGCCCu -3'
miRNA:   3'- -CCUUUUaaa-----UGUGCa--CGCCGa----CGGGc -5'
23562 5' -49.5 NC_005261.1 + 106026 0.67 0.995247
Target:  5'- aGGAccGGAg--GCACGccacCGcGCUGCCCGg -3'
miRNA:   3'- -CCU--UUUaaaUGUGCac--GC-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 31429 0.67 0.992559
Target:  5'- nGGGGAG---GCGCuG-GCGGCgccGCCCGg -3'
miRNA:   3'- -CCUUUUaaaUGUG-CaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 48037 0.67 0.991432
Target:  5'- cGAGGAgcacGCGCGcGCGGUcgggGCCCGc -3'
miRNA:   3'- cCUUUUaaa-UGUGCaCGCCGa---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 30262 0.67 0.991432
Target:  5'- --------cGCGCGgcGCGGCgGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCa-CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 22361 0.67 0.992559
Target:  5'- aGGGAGAUUgccggGCGCGccucgGCGGggGCCgCGc -3'
miRNA:   3'- -CCUUUUAAa----UGUGCa----CGCCgaCGG-GC- -5'
23562 5' -49.5 NC_005261.1 + 67999 0.67 0.992452
Target:  5'- aGGucGAGUUUGCGC--GCGGCgccaacuccagcaUGCCCGu -3'
miRNA:   3'- -CCu-UUUAAAUGUGcaCGCCG-------------ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 134779 0.67 0.991432
Target:  5'- --------cGCGCGgcGCGGCgGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCa-CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 90595 0.67 0.991432
Target:  5'- aGGAGGAcgcggUGCGCGcgGCGGCcgcggccGCCCc -3'
miRNA:   3'- -CCUUUUaa---AUGUGCa-CGCCGa------CGGGc -5'
23562 5' -49.5 NC_005261.1 + 31647 0.67 0.991432
Target:  5'- aGGAGGAgc-GC-CGcGCGGCgGCCCc -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 78132 0.67 0.991192
Target:  5'- cGGGcgcgcugGCcaGCGUGCuGCUGCCCa -3'
miRNA:   3'- -CCUuuuaaa-UG--UGCACGcCGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 31953 0.67 0.993658
Target:  5'- cGGc--GUUUGCACGggccgcccggcggcaGCGGCggcggcgGCCCGg -3'
miRNA:   3'- -CCuuuUAAAUGUGCa--------------CGCCGa------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 6133 0.68 0.985526
Target:  5'- --------aGCGCGUcGCGGCcGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCA-CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 98612 0.68 0.988779
Target:  5'- gGGAGGGUcUGCGCGacggggGCGGCggggGCgCGc -3'
miRNA:   3'- -CCUUUUAaAUGUGCa-----CGCCGa---CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 37188 0.68 0.990176
Target:  5'- cGGAcGAgcacUACGcGCGGCUGCCgGc -3'
miRNA:   3'- -CCUuUUaaauGUGCaCGCCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 67500 0.68 0.983454
Target:  5'- cGAGGAggcGCACGUGCuggacgugcucucGGCcgUGCCCGc -3'
miRNA:   3'- cCUUUUaaaUGUGCACG-------------CCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68955 0.68 0.983651
Target:  5'- cGGGGucg--GCGCGgGCGGCUcGCCgGg -3'
miRNA:   3'- -CCUUuuaaaUGUGCaCGCCGA-CGGgC- -5'
23562 5' -49.5 NC_005261.1 + 80676 0.68 0.983651
Target:  5'- cGGAGccgg-GCGCGUGCGaCgugUGCCCGu -3'
miRNA:   3'- -CCUUuuaaaUGUGCACGCcG---ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 108550 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 22010 0.68 0.989355
Target:  5'- uGGAAcGUgaugUACACGcuccuggagcgcuucUGCGGCgacgcGCCCa -3'
miRNA:   3'- -CCUUuUAa---AUGUGC---------------ACGCCGa----CGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.