miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 107325 0.67 0.994457
Target:  5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 89190 0.67 0.994457
Target:  5'- -------gUGCuCG-GCGGCUGCCUGc -3'
miRNA:   3'- ccuuuuaaAUGuGCaCGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 35260 0.67 0.993564
Target:  5'- --------cGCGCG-GCGGCggaGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 32306 0.67 0.993469
Target:  5'- cGGAGGgcgcggcGUggGCGCGcGCGaGCgGCCCGc -3'
miRNA:   3'- -CCUUU-------UAaaUGUGCaCGC-CGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 51801 0.67 0.994287
Target:  5'- uGGAccaccugGCgaugGCGUGCGGguuCUGCCCGc -3'
miRNA:   3'- -CCUuuuaaa-UG----UGCACGCC---GACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 31953 0.67 0.993658
Target:  5'- cGGc--GUUUGCACGggccgcccggcggcaGCGGCggcggcgGCCCGg -3'
miRNA:   3'- -CCuuuUAAAUGUGCa--------------CGCCGa------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 77814 0.67 0.993564
Target:  5'- --------aGCGCG-GCGGCcccggGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 22361 0.67 0.992559
Target:  5'- aGGGAGAUUgccggGCGCGccucgGCGGggGCCgCGc -3'
miRNA:   3'- -CCUUUUAAa----UGUGCa----CGCCgaCGG-GC- -5'
23562 5' -49.5 NC_005261.1 + 67999 0.67 0.992452
Target:  5'- aGGucGAGUUUGCGC--GCGGCgccaacuccagcaUGCCCGu -3'
miRNA:   3'- -CCu-UUUAAAUGUGcaCGCCG-------------ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 134779 0.67 0.991432
Target:  5'- --------cGCGCGgcGCGGCgGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCa-CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 33265 0.67 0.994457
Target:  5'- cGGggGAgg-ACGCuguUGCGGCcUGCgCGg -3'
miRNA:   3'- -CCuuUUaaaUGUGc--ACGCCG-ACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 51001 0.67 0.994457
Target:  5'- cGAGGcggUGCGCGUGCcGCUGuacCCCGu -3'
miRNA:   3'- cCUUUuaaAUGUGCACGcCGAC---GGGC- -5'
23562 5' -49.5 NC_005261.1 + 122448 0.67 0.994457
Target:  5'- --------cGCGCGgGCGGC-GCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 135038 0.67 0.995247
Target:  5'- cGGcGAGgccgACGCcUGCGGCggcagcgGCCCGc -3'
miRNA:   3'- -CCuUUUaaa-UGUGcACGCCGa------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 106026 0.67 0.995247
Target:  5'- aGGAccGGAg--GCACGccacCGcGCUGCCCGg -3'
miRNA:   3'- -CCU--UUUaaaUGUGCac--GC-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 99034 0.67 0.994457
Target:  5'- -------cUAC-CgGUGCGGCUGCUCGc -3'
miRNA:   3'- ccuuuuaaAUGuG-CACGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 78132 0.67 0.991192
Target:  5'- cGGGcgcgcugGCcaGCGUGCuGCUGCCCa -3'
miRNA:   3'- -CCUuuuaaa-UG--UGCACGcCGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 31647 0.67 0.991432
Target:  5'- aGGAGGAgc-GC-CGcGCGGCgGCCCc -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 90595 0.67 0.991432
Target:  5'- aGGAGGAcgcggUGCGCGcgGCGGCcgcggccGCCCc -3'
miRNA:   3'- -CCUUUUaa---AUGUGCa-CGCCGa------CGGGc -5'
23562 5' -49.5 NC_005261.1 + 15032 0.67 0.994457
Target:  5'- ------cUUACGCG-GCGGCUggguccGCCCa -3'
miRNA:   3'- ccuuuuaAAUGUGCaCGCCGA------CGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.