miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 41273 0.69 0.981598
Target:  5'- --------cGCGCccgGCGGCUGCCCc -3'
miRNA:   3'- ccuuuuaaaUGUGca-CGCCGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 46744 0.69 0.981598
Target:  5'- -------gUGCACGUGCcGCaGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCACGcCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 69750 0.69 0.981598
Target:  5'- aGGAGGAggcgaGCGCGggggGCGGC-GCCgGg -3'
miRNA:   3'- -CCUUUUaaa--UGUGCa---CGCCGaCGGgC- -5'
23562 5' -49.5 NC_005261.1 + 67176 0.69 0.981598
Target:  5'- --------cGCGCG-GCGGCUgGCCCa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGA-CGGGc -5'
23562 5' -49.5 NC_005261.1 + 95551 0.69 0.981598
Target:  5'- --------cGCGCGgcugccgGCGGCgGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCa------CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 14795 0.69 0.981598
Target:  5'- -------aUGCGCGagcUGCGGCUgcgGCCCGu -3'
miRNA:   3'- ccuuuuaaAUGUGC---ACGCCGA---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67500 0.68 0.983454
Target:  5'- cGAGGAggcGCACGUGCuggacgugcucucGGCcgUGCCCGc -3'
miRNA:   3'- cCUUUUaaaUGUGCACG-------------CCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68955 0.68 0.983651
Target:  5'- cGGGGucg--GCGCGgGCGGCUcGCCgGg -3'
miRNA:   3'- -CCUUuuaaaUGUGCaCGCCGA-CGGgC- -5'
23562 5' -49.5 NC_005261.1 + 80676 0.68 0.983651
Target:  5'- cGGAGccgg-GCGCGUGCGaCgugUGCCCGu -3'
miRNA:   3'- -CCUUuuaaaUGUGCACGCcG---ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 4032 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 108550 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 134429 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 73533 0.68 0.985526
Target:  5'- -------gUGCGCG-GCGGCgGCCCc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 8812 0.68 0.985526
Target:  5'- gGGAuaGAAUacgcuuuaUUGCGCGUcGCGGCcgucucacaGCCCGg -3'
miRNA:   3'- -CCU--UUUA--------AAUGUGCA-CGCCGa--------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68692 0.68 0.985526
Target:  5'- uGGggGccg-GCGCGgacgacgGCGGCgccgGCCCu -3'
miRNA:   3'- -CCuuUuaaaUGUGCa------CGCCGa---CGGGc -5'
23562 5' -49.5 NC_005261.1 + 29912 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 6133 0.68 0.985526
Target:  5'- --------aGCGCGUcGCGGCcGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCA-CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 95935 0.68 0.986737
Target:  5'- uGGGAGGUgcugggcgacaucuCGCG-GCGGCUGCUgGg -3'
miRNA:   3'- -CCUUUUAaau-----------GUGCaCGCCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 40722 0.68 0.987232
Target:  5'- cGAGGGgg-GCGCGUG-GGCguaGCCCa -3'
miRNA:   3'- cCUUUUaaaUGUGCACgCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 59073 0.68 0.987232
Target:  5'- cGGAGA----GCGCGcGCGGgUGCgCCGc -3'
miRNA:   3'- -CCUUUuaaaUGUGCaCGCCgACG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.