Results 41 - 60 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 116465 | 0.67 | 0.994457 |
Target: 5'- ---------cCGCG-GCGGCUcGCCCGg -3' miRNA: 3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 11948 | 0.67 | 0.994457 |
Target: 5'- ---------cCGCG-GCGGCUcGCCCGg -3' miRNA: 3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 2808 | 0.67 | 0.994457 |
Target: 5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3' miRNA: 3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 89190 | 0.67 | 0.994457 |
Target: 5'- -------gUGCuCG-GCGGCUGCCUGc -3' miRNA: 3'- ccuuuuaaAUGuGCaCGCCGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 107325 | 0.67 | 0.994457 |
Target: 5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3' miRNA: 3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 122448 | 0.67 | 0.994457 |
Target: 5'- --------cGCGCGgGCGGC-GCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 15163 | 0.67 | 0.994457 |
Target: 5'- uGggGGUggGCguaGCGgcgGCGGC-GCCCGc -3' miRNA: 3'- cCuuUUAaaUG---UGCa--CGCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 68785 | 0.67 | 0.994457 |
Target: 5'- cGAAcuucgUGCAgGUGCGGCUcauCCCGc -3' miRNA: 3'- cCUUuuaa-AUGUgCACGCCGAc--GGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 99034 | 0.67 | 0.994457 |
Target: 5'- -------cUAC-CgGUGCGGCUGCUCGc -3' miRNA: 3'- ccuuuuaaAUGuG-CACGCCGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 51001 | 0.67 | 0.994457 |
Target: 5'- cGAGGcggUGCGCGUGCcGCUGuacCCCGu -3' miRNA: 3'- cCUUUuaaAUGUGCACGcCGAC---GGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 33265 | 0.67 | 0.994457 |
Target: 5'- cGGggGAgg-ACGCuguUGCGGCcUGCgCGg -3' miRNA: 3'- -CCuuUUaaaUGUGc--ACGCCG-ACGgGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 15032 | 0.67 | 0.994457 |
Target: 5'- ------cUUACGCG-GCGGCUggguccGCCCa -3' miRNA: 3'- ccuuuuaAAUGUGCaCGCCGA------CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 51801 | 0.67 | 0.994287 |
Target: 5'- uGGAccaccugGCgaugGCGUGCGGguuCUGCCCGc -3' miRNA: 3'- -CCUuuuaaa-UG----UGCACGCC---GACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 31953 | 0.67 | 0.993658 |
Target: 5'- cGGc--GUUUGCACGggccgcccggcggcaGCGGCggcggcgGCCCGg -3' miRNA: 3'- -CCuuuUAAAUGUGCa--------------CGCCGa------CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 129218 | 0.67 | 0.993564 |
Target: 5'- -------cUGCugGUGCGGC-GCCUc -3' miRNA: 3'- ccuuuuaaAUGugCACGCCGaCGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 50444 | 0.67 | 0.993564 |
Target: 5'- -------gUGCGCGUGaaGCUGCgCCGg -3' miRNA: 3'- ccuuuuaaAUGUGCACgcCGACG-GGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 35260 | 0.67 | 0.993564 |
Target: 5'- --------cGCGCG-GCGGCggaGCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGa--CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 77814 | 0.67 | 0.993564 |
Target: 5'- --------aGCGCG-GCGGCcccggGCCCGg -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGa----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 32306 | 0.67 | 0.993469 |
Target: 5'- cGGAGGgcgcggcGUggGCGCGcGCGaGCgGCCCGc -3' miRNA: 3'- -CCUUU-------UAaaUGUGCaCGC-CGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 134842 | 0.67 | 0.992559 |
Target: 5'- cGGAAGugccgGCGCGgcugGCGGCcgcGCUCGc -3' miRNA: 3'- -CCUUUuaaa-UGUGCa---CGCCGa--CGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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