miRNA display CGI


Results 41 - 60 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 11948 0.67 0.994457
Target:  5'- ---------cCGCG-GCGGCUcGCCCGg -3'
miRNA:   3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 2808 0.67 0.994457
Target:  5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 116465 0.67 0.994457
Target:  5'- ---------cCGCG-GCGGCUcGCCCGg -3'
miRNA:   3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 89190 0.67 0.994457
Target:  5'- -------gUGCuCG-GCGGCUGCCUGc -3'
miRNA:   3'- ccuuuuaaAUGuGCaCGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 107325 0.67 0.994457
Target:  5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 15163 0.67 0.994457
Target:  5'- uGggGGUggGCguaGCGgcgGCGGC-GCCCGc -3'
miRNA:   3'- cCuuUUAaaUG---UGCa--CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68785 0.67 0.994457
Target:  5'- cGAAcuucgUGCAgGUGCGGCUcauCCCGc -3'
miRNA:   3'- cCUUuuaa-AUGUgCACGCCGAc--GGGC- -5'
23562 5' -49.5 NC_005261.1 + 122448 0.67 0.994457
Target:  5'- --------cGCGCGgGCGGC-GCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 99034 0.67 0.994457
Target:  5'- -------cUAC-CgGUGCGGCUGCUCGc -3'
miRNA:   3'- ccuuuuaaAUGuG-CACGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 51001 0.67 0.994457
Target:  5'- cGAGGcggUGCGCGUGCcGCUGuacCCCGu -3'
miRNA:   3'- cCUUUuaaAUGUGCACGcCGAC---GGGC- -5'
23562 5' -49.5 NC_005261.1 + 15032 0.67 0.994457
Target:  5'- ------cUUACGCG-GCGGCUggguccGCCCa -3'
miRNA:   3'- ccuuuuaAAUGUGCaCGCCGA------CGGGc -5'
23562 5' -49.5 NC_005261.1 + 33265 0.67 0.994457
Target:  5'- cGGggGAgg-ACGCuguUGCGGCcUGCgCGg -3'
miRNA:   3'- -CCuuUUaaaUGUGc--ACGCCG-ACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 51801 0.67 0.994287
Target:  5'- uGGAccaccugGCgaugGCGUGCGGguuCUGCCCGc -3'
miRNA:   3'- -CCUuuuaaa-UG----UGCACGCC---GACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 31953 0.67 0.993658
Target:  5'- cGGc--GUUUGCACGggccgcccggcggcaGCGGCggcggcgGCCCGg -3'
miRNA:   3'- -CCuuuUAAAUGUGCa--------------CGCCGa------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 50444 0.67 0.993564
Target:  5'- -------gUGCGCGUGaaGCUGCgCCGg -3'
miRNA:   3'- ccuuuuaaAUGUGCACgcCGACG-GGC- -5'
23562 5' -49.5 NC_005261.1 + 77814 0.67 0.993564
Target:  5'- --------aGCGCG-GCGGCcccggGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 35260 0.67 0.993564
Target:  5'- --------cGCGCG-GCGGCggaGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 129218 0.67 0.993564
Target:  5'- -------cUGCugGUGCGGC-GCCUc -3'
miRNA:   3'- ccuuuuaaAUGugCACGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 32306 0.67 0.993469
Target:  5'- cGGAGGgcgcggcGUggGCGCGcGCGaGCgGCCCGc -3'
miRNA:   3'- -CCUUU-------UAaaUGUGCaCGC-CGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 134842 0.67 0.992559
Target:  5'- cGGAAGugccgGCGCGgcugGCGGCcgcGCUCGc -3'
miRNA:   3'- -CCUUUuaaa-UGUGCa---CGCCGa--CGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.