Results 21 - 40 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 29415 | 0.66 | 0.997087 |
Target: 5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3' miRNA: 3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 63840 | 0.66 | 0.997087 |
Target: 5'- --------gGCGCGccaccUGCaGCUGCCCGa -3' miRNA: 3'- ccuuuuaaaUGUGC-----ACGcCGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 69461 | 0.66 | 0.997037 |
Target: 5'- -cGAAGUUcgACACG-GCGGCUccgcggcGCCCc -3' miRNA: 3'- ccUUUUAAa-UGUGCaCGCCGA-------CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 7653 | 0.66 | 0.996554 |
Target: 5'- cGGGGcc---GCGCG-GCGGCgcuuccGCCCGg -3' miRNA: 3'- -CCUUuuaaaUGUGCaCGCCGa-----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 19828 | 0.66 | 0.996554 |
Target: 5'- --------aGCGCGgcUGCGGC-GCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGC--ACGCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 30214 | 0.66 | 0.996554 |
Target: 5'- --------cGgACGUGCugccgcugcuggGGCUGCCCGa -3' miRNA: 3'- ccuuuuaaaUgUGCACG------------CCGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 62975 | 0.66 | 0.996554 |
Target: 5'- cGAAGGccgagUACGC--GCGGUUGCCCa -3' miRNA: 3'- cCUUUUaa---AUGUGcaCGCCGACGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 39719 | 0.66 | 0.996554 |
Target: 5'- gGGGAGGgggUUugGgGgGCGGgUGCCCc -3' miRNA: 3'- -CCUUUUa--AAugUgCaCGCCgACGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 50475 | 0.66 | 0.996554 |
Target: 5'- cGAGGAcgcuCGCGUccGCGGCgGCCCc -3' miRNA: 3'- cCUUUUaaauGUGCA--CGCCGaCGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 42676 | 0.66 | 0.996554 |
Target: 5'- cGGAAcgaGAgcUGCACGcGCGGCaUGCgCa -3' miRNA: 3'- -CCUU---UUaaAUGUGCaCGCCG-ACGgGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 118416 | 0.66 | 0.995944 |
Target: 5'- uGAAcuUUUGCAuCGaccgGCGGCUGaCCCc -3' miRNA: 3'- cCUUuuAAAUGU-GCa---CGCCGAC-GGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 33144 | 0.66 | 0.995944 |
Target: 5'- cGGAAGGUccgggGCGCGgagucgGCGGaccCUGCCgGg -3' miRNA: 3'- -CCUUUUAaa---UGUGCa-----CGCC---GACGGgC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 88209 | 0.66 | 0.995944 |
Target: 5'- --------cGCGCG-GCGGCUgggcGCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGA----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 8692 | 0.66 | 0.995944 |
Target: 5'- ------cUUGCACcuUGCGGCguaGCCCGc -3' miRNA: 3'- ccuuuuaAAUGUGc-ACGCCGa--CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 118850 | 0.66 | 0.995944 |
Target: 5'- --------gGCGCGgaggGCGGCgcGCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCa---CGCCGa-CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 38876 | 0.66 | 0.995812 |
Target: 5'- uGGAccucgu-CACGUGCGcGCUGCUg- -3' miRNA: 3'- -CCUuuuaaauGUGCACGC-CGACGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 135038 | 0.67 | 0.995247 |
Target: 5'- cGGcGAGgccgACGCcUGCGGCggcagcgGCCCGc -3' miRNA: 3'- -CCuUUUaaa-UGUGcACGCCGa------CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 90190 | 0.67 | 0.995247 |
Target: 5'- gGGAGGAcgcagggaGCGCGgggGCGGCggagcGCCCu -3' miRNA: 3'- -CCUUUUaaa-----UGUGCa--CGCCGa----CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 106026 | 0.67 | 0.995247 |
Target: 5'- aGGAccGGAg--GCACGccacCGcGCUGCCCGg -3' miRNA: 3'- -CCU--UUUaaaUGUGCac--GC-CGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 45617 | 0.67 | 0.994943 |
Target: 5'- cGGcggcgcgGCGCGgcGCGGCggGCCCGc -3' miRNA: 3'- -CCuuuuaaaUGUGCa-CGCCGa-CGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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