miRNA display CGI


Results 21 - 40 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 28069 0.66 0.997549
Target:  5'- cGGggG----GCGCGgugGCGGCgGCCa- -3'
miRNA:   3'- -CCuuUuaaaUGUGCa--CGCCGaCGGgc -5'
23562 5' -49.5 NC_005261.1 + 28187 0.72 0.91831
Target:  5'- cGAGAGcc-GgAUGUGgGGCUGCCCGc -3'
miRNA:   3'- cCUUUUaaaUgUGCACgCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 29206 0.68 0.988779
Target:  5'- -------cUGCGCGccacgGCGGCguucgGCCCGg -3'
miRNA:   3'- ccuuuuaaAUGUGCa----CGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 29415 0.66 0.997087
Target:  5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 29585 0.71 0.940092
Target:  5'- --------gGCGCGUGCagGGCUGCCgGg -3'
miRNA:   3'- ccuuuuaaaUGUGCACG--CCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 29912 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 30214 0.66 0.996554
Target:  5'- --------cGgACGUGCugccgcugcuggGGCUGCCCGa -3'
miRNA:   3'- ccuuuuaaaUgUGCACG------------CCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 30262 0.67 0.991432
Target:  5'- --------cGCGCGgcGCGGCgGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCa-CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 30325 0.67 0.992559
Target:  5'- cGGAAGugccgGCGCGgcugGCGGCcgcGCUCGc -3'
miRNA:   3'- -CCUUUuaaa-UGUGCa---CGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 30916 0.68 0.988779
Target:  5'- uGGgcGAgcUGCACGcgGCGGCcugGCCgCGg -3'
miRNA:   3'- -CCuuUUaaAUGUGCa-CGCCGa--CGG-GC- -5'
23562 5' -49.5 NC_005261.1 + 31293 0.68 0.988779
Target:  5'- gGGccGAggUGCGCGUGUcgcuGGCgGCCCu -3'
miRNA:   3'- -CCuuUUaaAUGUGCACG----CCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 31390 0.7 0.960393
Target:  5'- cGAGGAcgUGCGCGUgGUGGUgcucuacgacccgcUGCCCGg -3'
miRNA:   3'- cCUUUUaaAUGUGCA-CGCCG--------------ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 31429 0.67 0.992559
Target:  5'- nGGGGAG---GCGCuG-GCGGCgccGCCCGg -3'
miRNA:   3'- -CCUUUUaaaUGUG-CaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 31647 0.67 0.991432
Target:  5'- aGGAGGAgc-GC-CGcGCGGCgGCCCc -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 31775 0.66 0.997949
Target:  5'- -------cUGCGCGccGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 31893 0.66 0.997949
Target:  5'- cGGggGcgg-ACGCG-GCGGCgggGCCg- -3'
miRNA:   3'- -CCuuUuaaaUGUGCaCGCCGa--CGGgc -5'
23562 5' -49.5 NC_005261.1 + 31953 0.67 0.993658
Target:  5'- cGGc--GUUUGCACGggccgcccggcggcaGCGGCggcggcgGCCCGg -3'
miRNA:   3'- -CCuuuUAAAUGUGCa--------------CGCCGa------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 32306 0.67 0.993469
Target:  5'- cGGAGGgcgcggcGUggGCGCGcGCGaGCgGCCCGc -3'
miRNA:   3'- -CCUUU-------UAaaUGUGCaCGC-CGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 32368 0.66 0.997087
Target:  5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 32689 0.76 0.742617
Target:  5'- --------cGCGCGUGCGGCcaGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCACGCCGa-CGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.