miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 118850 0.66 0.995944
Target:  5'- --------gGCGCGgaggGCGGCgcGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCa---CGCCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 118416 0.66 0.995944
Target:  5'- uGAAcuUUUGCAuCGaccgGCGGCUGaCCCc -3'
miRNA:   3'- cCUUuuAAAUGU-GCa---CGCCGAC-GGGc -5'
23562 5' -49.5 NC_005261.1 + 116465 0.67 0.994457
Target:  5'- ---------cCGCG-GCGGCUcGCCCGg -3'
miRNA:   3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 111713 0.66 0.997949
Target:  5'- aGGggGGggUGCGCGUGCguGGCaGCg-- -3'
miRNA:   3'- -CCuuUUaaAUGUGCACG--CCGaCGggc -5'
23562 5' -49.5 NC_005261.1 + 108550 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 107799 0.7 0.957721
Target:  5'- aGGAGGGccu-CGCGcGCGGCgGCCCu -3'
miRNA:   3'- -CCUUUUaaauGUGCaCGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 107325 0.67 0.994457
Target:  5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 106480 0.77 0.679926
Target:  5'- -------gUACACGUGCGcCUGCCCGa -3'
miRNA:   3'- ccuuuuaaAUGUGCACGCcGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 106026 0.67 0.995247
Target:  5'- aGGAccGGAg--GCACGccacCGcGCUGCCCGg -3'
miRNA:   3'- -CCU--UUUaaaUGUGCac--GC-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 102665 0.74 0.828781
Target:  5'- uGGAGGAUa-GCGCG-GCGGCUGCugCCGc -3'
miRNA:   3'- -CCUUUUAaaUGUGCaCGCCGACG--GGC- -5'
23562 5' -49.5 NC_005261.1 + 100810 0.73 0.87785
Target:  5'- cGGAAGG---GCGCGUGCGcCUGCgCCGc -3'
miRNA:   3'- -CCUUUUaaaUGUGCACGCcGACG-GGC- -5'
23562 5' -49.5 NC_005261.1 + 99034 0.67 0.994457
Target:  5'- -------cUAC-CgGUGCGGCUGCUCGc -3'
miRNA:   3'- ccuuuuaaAUGuG-CACGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 98612 0.68 0.988779
Target:  5'- gGGAGGGUcUGCGCGacggggGCGGCggggGCgCGc -3'
miRNA:   3'- -CCUUUUAaAUGUGCa-----CGCCGa---CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 98091 0.69 0.979357
Target:  5'- uGGAGAAUcuggggGCGCGgcggGCGGCgagGCUgGg -3'
miRNA:   3'- -CCUUUUAaa----UGUGCa---CGCCGa--CGGgC- -5'
23562 5' -49.5 NC_005261.1 + 97961 0.66 0.997549
Target:  5'- aGGGAGGUggcgGCGgaGCGG-UGCCCGg -3'
miRNA:   3'- -CCUUUUAaaugUGCa-CGCCgACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 95935 0.68 0.986737
Target:  5'- uGGGAGGUgcugggcgacaucuCGCG-GCGGCUGCUgGg -3'
miRNA:   3'- -CCUUUUAaau-----------GUGCaCGCCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 95551 0.69 0.981598
Target:  5'- --------cGCGCGgcugccgGCGGCgGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCa------CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 95159 0.66 0.997549
Target:  5'- cGGGAAcc-UGCA-GUGCGGCgagggggacgUGCCCc -3'
miRNA:   3'- -CCUUUuaaAUGUgCACGCCG----------ACGGGc -5'
23562 5' -49.5 NC_005261.1 + 94208 0.69 0.979357
Target:  5'- --------cGCGCG-GCGGCcGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 90821 0.7 0.957721
Target:  5'- cGGGAGuaccgcgugUGCACGggggGCGGCgccGCCCc -3'
miRNA:   3'- -CCUUUuaa------AUGUGCa---CGCCGa--CGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.