miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 90595 0.67 0.991432
Target:  5'- aGGAGGAcgcggUGCGCGcgGCGGCcgcggccGCCCc -3'
miRNA:   3'- -CCUUUUaa---AUGUGCa-CGCCGa------CGGGc -5'
23562 5' -49.5 NC_005261.1 + 90190 0.67 0.995247
Target:  5'- gGGAGGAcgcagggaGCGCGgggGCGGCggagcGCCCu -3'
miRNA:   3'- -CCUUUUaaa-----UGUGCa--CGCCGa----CGGGc -5'
23562 5' -49.5 NC_005261.1 + 89190 0.67 0.994457
Target:  5'- -------gUGCuCG-GCGGCUGCCUGc -3'
miRNA:   3'- ccuuuuaaAUGuGCaCGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 88209 0.66 0.995944
Target:  5'- --------cGCGCG-GCGGCUgggcGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGA----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 85324 0.73 0.862387
Target:  5'- cGGAAcGUgacgucGCGCGUGUGGCUauuuaacgaGCCCGc -3'
miRNA:   3'- -CCUUuUAaa----UGUGCACGCCGA---------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 84097 0.66 0.997549
Target:  5'- ---------cCGCGUGCGGCgUGCCg- -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCG-ACGGgc -5'
23562 5' -49.5 NC_005261.1 + 82965 0.68 0.988779
Target:  5'- cGGAAGAcguggUGCGCGUcgagcacggagGCGGCcGCCUc -3'
miRNA:   3'- -CCUUUUaa---AUGUGCA-----------CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 81970 0.66 0.997087
Target:  5'- --------aGCGCGguguucgGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCa------CGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 80930 0.7 0.965041
Target:  5'- uGGAcGAgg-ACGuCGcGCGGCUGCUCGc -3'
miRNA:   3'- -CCUuUUaaaUGU-GCaCGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 80676 0.68 0.983651
Target:  5'- cGGAGccgg-GCGCGUGCGaCgugUGCCCGu -3'
miRNA:   3'- -CCUUuuaaaUGUGCACGCcG---ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 80587 0.66 0.997949
Target:  5'- cGGggGcg-UGCuCGgGCGGCUGCUg- -3'
miRNA:   3'- -CCuuUuaaAUGuGCaCGCCGACGGgc -5'
23562 5' -49.5 NC_005261.1 + 79115 0.68 0.990176
Target:  5'- cGGGAGAUguaccggUACGCcaggaagGCGGCcaccaGCCCGg -3'
miRNA:   3'- -CCUUUUAa------AUGUGca-----CGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 78833 0.66 0.997549
Target:  5'- cGGGAGcugcggUACGcCG-GCGGC-GCCCGc -3'
miRNA:   3'- -CCUUUuaa---AUGU-GCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 78132 0.67 0.991192
Target:  5'- cGGGcgcgcugGCcaGCGUGCuGCUGCCCa -3'
miRNA:   3'- -CCUuuuaaa-UG--UGCACGcCGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 77814 0.67 0.993564
Target:  5'- --------aGCGCG-GCGGCcccggGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 74868 0.73 0.882303
Target:  5'- cGGAGGAggcggACGCGgcgGCGGCggcggagucggcgGCCCGc -3'
miRNA:   3'- -CCUUUUaaa--UGUGCa--CGCCGa------------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 73533 0.68 0.985526
Target:  5'- -------gUGCGCG-GCGGCgGCCCc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 73246 0.69 0.979357
Target:  5'- uGGAGcaccUGCACGcgcUGCGGCgGCUCGu -3'
miRNA:   3'- -CCUUuuaaAUGUGC---ACGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 72683 0.71 0.944883
Target:  5'- uGGAcgccugGCACGcGCuGCUGCCCGc -3'
miRNA:   3'- -CCUuuuaaaUGUGCaCGcCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 70524 0.68 0.988779
Target:  5'- gGGAcGAUcgcCACG-GCGGC-GCCCGc -3'
miRNA:   3'- -CCUuUUAaauGUGCaCGCCGaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.