miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 33095 0.69 0.97692
Target:  5'- cGAGGAccUGCGCGcGcCGGCgGCCCGc -3'
miRNA:   3'- cCUUUUaaAUGUGCaC-GCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 33144 0.66 0.995944
Target:  5'- cGGAAGGUccgggGCGCGgagucgGCGGaccCUGCCgGg -3'
miRNA:   3'- -CCUUUUAaa---UGUGCa-----CGCC---GACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 33265 0.67 0.994457
Target:  5'- cGGggGAgg-ACGCuguUGCGGCcUGCgCGg -3'
miRNA:   3'- -CCuuUUaaaUGUGc--ACGCCG-ACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 33599 0.72 0.904542
Target:  5'- aGGGGcggcgccgGCGCGgGCGGCgggGCCCGg -3'
miRNA:   3'- -CCUUuuaaa---UGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 34036 0.66 0.997949
Target:  5'- --------gGCGCGgcgcGCGcGCUGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCa---CGC-CGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 35260 0.67 0.993564
Target:  5'- --------cGCGCG-GCGGCggaGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 36340 0.72 0.905845
Target:  5'- aGGAGGA---GCGCGcGCGGCUgggcGCCCu -3'
miRNA:   3'- -CCUUUUaaaUGUGCaCGCCGA----CGGGc -5'
23562 5' -49.5 NC_005261.1 + 37188 0.68 0.990176
Target:  5'- cGGAcGAgcacUACGcGCGGCUGCCgGc -3'
miRNA:   3'- -CCUuUUaaauGUGCaCGCCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 37881 0.68 0.990176
Target:  5'- --------gGCGCGUGCuGgaGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCACGcCgaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 38876 0.66 0.995812
Target:  5'- uGGAccucgu-CACGUGCGcGCUGCUg- -3'
miRNA:   3'- -CCUuuuaaauGUGCACGC-CGACGGgc -5'
23562 5' -49.5 NC_005261.1 + 39719 0.66 0.996554
Target:  5'- gGGGAGGgggUUugGgGgGCGGgUGCCCc -3'
miRNA:   3'- -CCUUUUa--AAugUgCaCGCCgACGGGc -5'
23562 5' -49.5 NC_005261.1 + 40722 0.68 0.987232
Target:  5'- cGAGGGgg-GCGCGUG-GGCguaGCCCa -3'
miRNA:   3'- cCUUUUaaaUGUGCACgCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 41273 0.69 0.981598
Target:  5'- --------cGCGCccgGCGGCUGCCCc -3'
miRNA:   3'- ccuuuuaaaUGUGca-CGCCGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 42434 0.68 0.988779
Target:  5'- uGGAAGAUggugUugAUGUGaCGGCUGUg-- -3'
miRNA:   3'- -CCUUUUAa---AugUGCAC-GCCGACGggc -5'
23562 5' -49.5 NC_005261.1 + 42676 0.66 0.996554
Target:  5'- cGGAAcgaGAgcUGCACGcGCGGCaUGCgCa -3'
miRNA:   3'- -CCUU---UUaaAUGUGCaCGCCG-ACGgGc -5'
23562 5' -49.5 NC_005261.1 + 43344 0.71 0.951157
Target:  5'- --------cGCGCGUGUGGCUgcacgcgggccgcccGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCACGCCGA---------------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 44368 0.68 0.988779
Target:  5'- uGGAAGGagUGCGCGcgccucGUGGaCUGCUCGg -3'
miRNA:   3'- -CCUUUUaaAUGUGCa-----CGCC-GACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 45617 0.67 0.994943
Target:  5'- cGGcggcgcgGCGCGgcGCGGCggGCCCGc -3'
miRNA:   3'- -CCuuuuaaaUGUGCa-CGCCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 46744 0.69 0.981598
Target:  5'- -------gUGCACGUGCcGCaGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCACGcCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 48037 0.67 0.991432
Target:  5'- cGAGGAgcacGCGCGcGCGGUcgggGCCCGc -3'
miRNA:   3'- cCUUUUaaa-UGUGCaCGCCGa---CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.