miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 60405 0.69 0.979357
Target:  5'- aGGggGGgcgguggUGCugGgGCGGCaGCUCGg -3'
miRNA:   3'- -CCuuUUaa-----AUGugCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 106480 0.77 0.679926
Target:  5'- -------gUACACGUGCGcCUGCCCGa -3'
miRNA:   3'- ccuuuuaaAUGUGCACGCcGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 102665 0.74 0.828781
Target:  5'- uGGAGGAUa-GCGCG-GCGGCUGCugCCGc -3'
miRNA:   3'- -CCUUUUAaaUGUGCaCGCCGACG--GGC- -5'
23562 5' -49.5 NC_005261.1 + 85324 0.73 0.862387
Target:  5'- cGGAAcGUgacgucGCGCGUGUGGCUauuuaacgaGCCCGc -3'
miRNA:   3'- -CCUUuUAaa----UGUGCACGCCGA---------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 433 0.72 0.904542
Target:  5'- aGGGGcggcgccgGCGCGgGCGGCgggGCCCGg -3'
miRNA:   3'- -CCUUuuaaa---UGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 138116 0.72 0.904542
Target:  5'- aGGGGcggcgccgGCGCGgGCGGCgggGCCCGg -3'
miRNA:   3'- -CCUUuuaaa---UGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 36340 0.72 0.905845
Target:  5'- aGGAGGA---GCGCGcGCGGCUgggcGCCCu -3'
miRNA:   3'- -CCUUUUaaaUGUGCaCGCCGA----CGGGc -5'
23562 5' -49.5 NC_005261.1 + 28187 0.72 0.91831
Target:  5'- cGAGAGcc-GgAUGUGgGGCUGCCCGc -3'
miRNA:   3'- cCUUUUaaaUgUGCACgCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 134102 0.71 0.940092
Target:  5'- --------gGCGCGUGCagGGCUGCCgGg -3'
miRNA:   3'- ccuuuuaaaUGUGCACG--CCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 72683 0.71 0.944883
Target:  5'- uGGAcgccugGCACGcGCuGCUGCCCGc -3'
miRNA:   3'- -CCUuuuaaaUGUGCaCGcCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 43344 0.71 0.951157
Target:  5'- --------cGCGCGUGUGGCUgcacgcgggccgcccGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCACGCCGA---------------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 90821 0.7 0.957721
Target:  5'- cGGGAGuaccgcgugUGCACGggggGCGGCgccGCCCc -3'
miRNA:   3'- -CCUUUuaa------AUGUGCa---CGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 135907 0.7 0.960393
Target:  5'- cGAGGAcgUGCGCGUgGUGGUgcucuacgacccgcUGCCCGg -3'
miRNA:   3'- cCUUUUaaAUGUGCA-CGCCG--------------ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 80930 0.7 0.965041
Target:  5'- uGGAcGAgg-ACGuCGcGCGGCUGCUCGc -3'
miRNA:   3'- -CCUuUUaaaUGU-GCaCGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67394 0.7 0.968346
Target:  5'- uGGAGGAggcgUACGCGcGCgccGGCgcGCCCGg -3'
miRNA:   3'- -CCUUUUaa--AUGUGCaCG---CCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 64773 0.69 0.974278
Target:  5'- aGGggGGgcgcgcggACGCGgacGCGGCcgGCCUGg -3'
miRNA:   3'- -CCuuUUaaa-----UGUGCa--CGCCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 55540 0.69 0.974278
Target:  5'- uGGGGA----GCGCG-GCGGUggcGCCCGa -3'
miRNA:   3'- -CCUUUuaaaUGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127243 0.69 0.976149
Target:  5'- cGGAGGAccagcgccagucggGCGCGgggcgGCGGCgGCCCa -3'
miRNA:   3'- -CCUUUUaaa-----------UGUGCa----CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 33095 0.69 0.97692
Target:  5'- cGAGGAccUGCGCGcGcCGGCgGCCCGc -3'
miRNA:   3'- cCUUUUaaAUGUGCaC-GCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 73246 0.69 0.979357
Target:  5'- uGGAGcaccUGCACGcgcUGCGGCgGCUCGu -3'
miRNA:   3'- -CCUUuuaaAUGUGC---ACGCCGaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.