miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 63840 0.66 0.997087
Target:  5'- --------gGCGCGccaccUGCaGCUGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUGC-----ACGcCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 80587 0.66 0.997949
Target:  5'- cGGggGcg-UGCuCGgGCGGCUGCUg- -3'
miRNA:   3'- -CCuuUuaaAUGuGCaCGCCGACGGgc -5'
23562 5' -49.5 NC_005261.1 + 95159 0.66 0.997549
Target:  5'- cGGGAAcc-UGCA-GUGCGGCgagggggacgUGCCCc -3'
miRNA:   3'- -CCUUUuaaAUGUgCACGCCG----------ACGGGc -5'
23562 5' -49.5 NC_005261.1 + 31893 0.66 0.997949
Target:  5'- cGGggGcgg-ACGCG-GCGGCgggGCCg- -3'
miRNA:   3'- -CCuuUuaaaUGUGCaCGCCGa--CGGgc -5'
23562 5' -49.5 NC_005261.1 + 29415 0.66 0.997087
Target:  5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 118850 0.66 0.995944
Target:  5'- --------gGCGCGgaggGCGGCgcGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCa---CGCCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 7195 0.66 0.997949
Target:  5'- aGGggGGggUGCGCGUGCguGGCaGCg-- -3'
miRNA:   3'- -CCuuUUaaAUGUGCACG--CCGaCGggc -5'
23562 5' -49.5 NC_005261.1 + 30214 0.66 0.996554
Target:  5'- --------cGgACGUGCugccgcugcuggGGCUGCCCGa -3'
miRNA:   3'- ccuuuuaaaUgUGCACG------------CCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 6339 0.66 0.997417
Target:  5'- cGGGugcgcgccguCGCGUGCGGCggcgGCCg- -3'
miRNA:   3'- -CCUuuuaaau---GUGCACGCCGa---CGGgc -5'
23562 5' -49.5 NC_005261.1 + 39719 0.66 0.996554
Target:  5'- gGGGAGGgggUUugGgGgGCGGgUGCCCc -3'
miRNA:   3'- -CCUUUUa--AAugUgCaCGCCgACGGGc -5'
23562 5' -49.5 NC_005261.1 + 88209 0.66 0.995944
Target:  5'- --------cGCGCG-GCGGCUgggcGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGA----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 97961 0.66 0.997549
Target:  5'- aGGGAGGUggcgGCGgaGCGG-UGCCCGg -3'
miRNA:   3'- -CCUUUUAaaugUGCa-CGCCgACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 32368 0.66 0.997087
Target:  5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 31775 0.66 0.997949
Target:  5'- -------cUGCGCGccGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 34036 0.66 0.997949
Target:  5'- --------gGCGCGgcgcGCGcGCUGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCa---CGC-CGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 136292 0.66 0.997949
Target:  5'- -------cUGCGCGccGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 33265 0.67 0.994457
Target:  5'- cGGggGAgg-ACGCuguUGCGGCcUGCgCGg -3'
miRNA:   3'- -CCuuUUaaaUGUGc--ACGCCG-ACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 90595 0.67 0.991432
Target:  5'- aGGAGGAcgcggUGCGCGcgGCGGCcgcggccGCCCc -3'
miRNA:   3'- -CCUUUUaa---AUGUGCa-CGCCGa------CGGGc -5'
23562 5' -49.5 NC_005261.1 + 134842 0.67 0.992559
Target:  5'- cGGAAGugccgGCGCGgcugGCGGCcgcGCUCGc -3'
miRNA:   3'- -CCUUUuaaa-UGUGCa---CGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 32306 0.67 0.993469
Target:  5'- cGGAGGgcgcggcGUggGCGCGcGCGaGCgGCCCGc -3'
miRNA:   3'- -CCUUU-------UAaaUGUGCaCGC-CGaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.