miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 33144 0.66 0.995944
Target:  5'- cGGAAGGUccgggGCGCGgagucgGCGGaccCUGCCgGg -3'
miRNA:   3'- -CCUUUUAaa---UGUGCa-----CGCC---GACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 28069 0.66 0.997549
Target:  5'- cGGggG----GCGCGgugGCGGCgGCCa- -3'
miRNA:   3'- -CCuuUuaaaUGUGCa--CGCCGaCGGgc -5'
23562 5' -49.5 NC_005261.1 + 57700 0.66 0.997949
Target:  5'- --------aGCACGUGaCGGUgGCCUGg -3'
miRNA:   3'- ccuuuuaaaUGUGCAC-GCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 30214 0.66 0.996554
Target:  5'- --------cGgACGUGCugccgcugcuggGGCUGCCCGa -3'
miRNA:   3'- ccuuuuaaaUgUGCACG------------CCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 19828 0.66 0.996554
Target:  5'- --------aGCGCGgcUGCGGC-GCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGC--ACGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 62975 0.66 0.996554
Target:  5'- cGAAGGccgagUACGC--GCGGUUGCCCa -3'
miRNA:   3'- cCUUUUaa---AUGUGcaCGCCGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 42676 0.66 0.996554
Target:  5'- cGGAAcgaGAgcUGCACGcGCGGCaUGCgCa -3'
miRNA:   3'- -CCUU---UUaaAUGUGCaCGCCG-ACGgGc -5'
23562 5' -49.5 NC_005261.1 + 6339 0.66 0.997417
Target:  5'- cGGGugcgcgccguCGCGUGCGGCggcgGCCg- -3'
miRNA:   3'- -CCUuuuaaau---GUGCACGCCGa---CGGgc -5'
23562 5' -49.5 NC_005261.1 + 136885 0.66 0.997087
Target:  5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 38876 0.66 0.995812
Target:  5'- uGGAccucgu-CACGUGCGcGCUGCUg- -3'
miRNA:   3'- -CCUuuuaaauGUGCACGC-CGACGGgc -5'
23562 5' -49.5 NC_005261.1 + 84097 0.66 0.997549
Target:  5'- ---------cCGCGUGCGGCgUGCCg- -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCG-ACGGgc -5'
23562 5' -49.5 NC_005261.1 + 88209 0.66 0.995944
Target:  5'- --------cGCGCG-GCGGCUgggcGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGA----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 7653 0.66 0.996554
Target:  5'- cGGGGcc---GCGCG-GCGGCgcuuccGCCCGg -3'
miRNA:   3'- -CCUUuuaaaUGUGCaCGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 118416 0.66 0.995944
Target:  5'- uGAAcuUUUGCAuCGaccgGCGGCUGaCCCc -3'
miRNA:   3'- cCUUuuAAAUGU-GCa---CGCCGAC-GGGc -5'
23562 5' -49.5 NC_005261.1 + 8692 0.66 0.995944
Target:  5'- ------cUUGCACcuUGCGGCguaGCCCGc -3'
miRNA:   3'- ccuuuuaAAUGUGc-ACGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 80587 0.66 0.997949
Target:  5'- cGGggGcg-UGCuCGgGCGGCUGCUg- -3'
miRNA:   3'- -CCuuUuaaAUGuGCaCGCCGACGGgc -5'
23562 5' -49.5 NC_005261.1 + 18378 0.66 0.997949
Target:  5'- aGGGAGc---GCACGgucagggGCaGGCUGCCgGg -3'
miRNA:   3'- -CCUUUuaaaUGUGCa------CG-CCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 133932 0.66 0.997087
Target:  5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 69461 0.66 0.997037
Target:  5'- -cGAAGUUcgACACG-GCGGCUccgcggcGCCCc -3'
miRNA:   3'- ccUUUUAAa-UGUGCaCGCCGA-------CGGGc -5'
23562 5' -49.5 NC_005261.1 + 59997 0.66 0.997549
Target:  5'- --------cGCACGccUGCGGCUGCUg- -3'
miRNA:   3'- ccuuuuaaaUGUGC--ACGCCGACGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.