Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 33144 | 0.66 | 0.995944 |
Target: 5'- cGGAAGGUccgggGCGCGgagucgGCGGaccCUGCCgGg -3' miRNA: 3'- -CCUUUUAaa---UGUGCa-----CGCC---GACGGgC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 28069 | 0.66 | 0.997549 |
Target: 5'- cGGggG----GCGCGgugGCGGCgGCCa- -3' miRNA: 3'- -CCuuUuaaaUGUGCa--CGCCGaCGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 57700 | 0.66 | 0.997949 |
Target: 5'- --------aGCACGUGaCGGUgGCCUGg -3' miRNA: 3'- ccuuuuaaaUGUGCAC-GCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 30214 | 0.66 | 0.996554 |
Target: 5'- --------cGgACGUGCugccgcugcuggGGCUGCCCGa -3' miRNA: 3'- ccuuuuaaaUgUGCACG------------CCGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 19828 | 0.66 | 0.996554 |
Target: 5'- --------aGCGCGgcUGCGGC-GCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGC--ACGCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 62975 | 0.66 | 0.996554 |
Target: 5'- cGAAGGccgagUACGC--GCGGUUGCCCa -3' miRNA: 3'- cCUUUUaa---AUGUGcaCGCCGACGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 42676 | 0.66 | 0.996554 |
Target: 5'- cGGAAcgaGAgcUGCACGcGCGGCaUGCgCa -3' miRNA: 3'- -CCUU---UUaaAUGUGCaCGCCG-ACGgGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 6339 | 0.66 | 0.997417 |
Target: 5'- cGGGugcgcgccguCGCGUGCGGCggcgGCCg- -3' miRNA: 3'- -CCUuuuaaau---GUGCACGCCGa---CGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 136885 | 0.66 | 0.997087 |
Target: 5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3' miRNA: 3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 38876 | 0.66 | 0.995812 |
Target: 5'- uGGAccucgu-CACGUGCGcGCUGCUg- -3' miRNA: 3'- -CCUuuuaaauGUGCACGC-CGACGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 84097 | 0.66 | 0.997549 |
Target: 5'- ---------cCGCGUGCGGCgUGCCg- -3' miRNA: 3'- ccuuuuaaauGUGCACGCCG-ACGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 88209 | 0.66 | 0.995944 |
Target: 5'- --------cGCGCG-GCGGCUgggcGCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGA----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 7653 | 0.66 | 0.996554 |
Target: 5'- cGGGGcc---GCGCG-GCGGCgcuuccGCCCGg -3' miRNA: 3'- -CCUUuuaaaUGUGCaCGCCGa-----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 118416 | 0.66 | 0.995944 |
Target: 5'- uGAAcuUUUGCAuCGaccgGCGGCUGaCCCc -3' miRNA: 3'- cCUUuuAAAUGU-GCa---CGCCGAC-GGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 8692 | 0.66 | 0.995944 |
Target: 5'- ------cUUGCACcuUGCGGCguaGCCCGc -3' miRNA: 3'- ccuuuuaAAUGUGc-ACGCCGa--CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 80587 | 0.66 | 0.997949 |
Target: 5'- cGGggGcg-UGCuCGgGCGGCUGCUg- -3' miRNA: 3'- -CCuuUuaaAUGuGCaCGCCGACGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 18378 | 0.66 | 0.997949 |
Target: 5'- aGGGAGc---GCACGgucagggGCaGGCUGCCgGg -3' miRNA: 3'- -CCUUUuaaaUGUGCa------CG-CCGACGGgC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 133932 | 0.66 | 0.997087 |
Target: 5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3' miRNA: 3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 69461 | 0.66 | 0.997037 |
Target: 5'- -cGAAGUUcgACACG-GCGGCUccgcggcGCCCc -3' miRNA: 3'- ccUUUUAAa-UGUGCaCGCCGA-------CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 59997 | 0.66 | 0.997549 |
Target: 5'- --------cGCACGccUGCGGCUGCUg- -3' miRNA: 3'- ccuuuuaaaUGUGC--ACGCCGACGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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