miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 433 0.72 0.904542
Target:  5'- aGGGGcggcgccgGCGCGgGCGGCgggGCCCGg -3'
miRNA:   3'- -CCUUuuaaa---UGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 1963 0.77 0.679926
Target:  5'- -------gUACACGUGCGcCUGCCCGa -3'
miRNA:   3'- ccuuuuaaAUGUGCACGCcGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 2808 0.67 0.994457
Target:  5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 4032 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 6133 0.68 0.985526
Target:  5'- --------aGCGCGUcGCGGCcGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCA-CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 6339 0.66 0.997417
Target:  5'- cGGGugcgcgccguCGCGUGCGGCggcgGCCg- -3'
miRNA:   3'- -CCUuuuaaau---GUGCACGCCGa---CGGgc -5'
23562 5' -49.5 NC_005261.1 + 7195 0.66 0.997949
Target:  5'- aGGggGGggUGCGCGUGCguGGCaGCg-- -3'
miRNA:   3'- -CCuuUUaaAUGUGCACG--CCGaCGggc -5'
23562 5' -49.5 NC_005261.1 + 7653 0.66 0.996554
Target:  5'- cGGGGcc---GCGCG-GCGGCgcuuccGCCCGg -3'
miRNA:   3'- -CCUUuuaaaUGUGCaCGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 8692 0.66 0.995944
Target:  5'- ------cUUGCACcuUGCGGCguaGCCCGc -3'
miRNA:   3'- ccuuuuaAAUGUGc-ACGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 8812 0.68 0.985526
Target:  5'- gGGAuaGAAUacgcuuuaUUGCGCGUcGCGGCcgucucacaGCCCGg -3'
miRNA:   3'- -CCU--UUUA--------AAUGUGCA-CGCCGa--------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 11948 0.67 0.994457
Target:  5'- ---------cCGCG-GCGGCUcGCCCGg -3'
miRNA:   3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 14795 0.69 0.981598
Target:  5'- -------aUGCGCGagcUGCGGCUgcgGCCCGu -3'
miRNA:   3'- ccuuuuaaAUGUGC---ACGCCGA---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 15032 0.67 0.994457
Target:  5'- ------cUUACGCG-GCGGCUggguccGCCCa -3'
miRNA:   3'- ccuuuuaAAUGUGCaCGCCGA------CGGGc -5'
23562 5' -49.5 NC_005261.1 + 15163 0.67 0.994457
Target:  5'- uGggGGUggGCguaGCGgcgGCGGC-GCCCGc -3'
miRNA:   3'- cCuuUUAaaUG---UGCa--CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 18378 0.66 0.997949
Target:  5'- aGGGAGc---GCACGgucagggGCaGGCUGCCgGg -3'
miRNA:   3'- -CCUUUuaaaUGUGCa------CG-CCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 19828 0.66 0.996554
Target:  5'- --------aGCGCGgcUGCGGC-GCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGC--ACGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 22010 0.68 0.989355
Target:  5'- uGGAAcGUgaugUACACGcuccuggagcgcuucUGCGGCgacgcGCCCa -3'
miRNA:   3'- -CCUUuUAa---AUGUGC---------------ACGCCGa----CGGGc -5'
23562 5' -49.5 NC_005261.1 + 22361 0.67 0.992559
Target:  5'- aGGGAGAUUgccggGCGCGccucgGCGGggGCCgCGc -3'
miRNA:   3'- -CCUUUUAAa----UGUGCa----CGCCgaCGG-GC- -5'
23562 5' -49.5 NC_005261.1 + 22726 0.69 0.976149
Target:  5'- cGGAGGAccagcgccagucggGCGCGgggcgGCGGCgGCCCa -3'
miRNA:   3'- -CCUUUUaaa-----------UGUGCa----CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 22943 0.68 0.988779
Target:  5'- --------gACGCGuUGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGC-ACGCCG--ACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.