miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 129006 1.12 0.007951
Target:  5'- gGGAAAAUUUACACGUGCGGCUGCCCGu -3'
miRNA:   3'- -CCUUUUAAAUGUGCACGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 57916 0.79 0.572962
Target:  5'- cGGAAGAcggcccGCACGcGCGuGCUGCCCGg -3'
miRNA:   3'- -CCUUUUaaa---UGUGCaCGC-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 106480 0.77 0.679926
Target:  5'- -------gUACACGUGCGcCUGCCCGa -3'
miRNA:   3'- ccuuuuaaAUGUGCACGCcGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 1963 0.77 0.679926
Target:  5'- -------gUACACGUGCGcCUGCCCGa -3'
miRNA:   3'- ccuuuuaaAUGUGCACGCcGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 32689 0.76 0.742617
Target:  5'- --------cGCGCGUGCGGCcaGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCACGCCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 102665 0.74 0.828781
Target:  5'- uGGAGGAUa-GCGCG-GCGGCUGCugCCGc -3'
miRNA:   3'- -CCUUUUAaaUGUGCaCGCCGACG--GGC- -5'
23562 5' -49.5 NC_005261.1 + 85324 0.73 0.862387
Target:  5'- cGGAAcGUgacgucGCGCGUGUGGCUauuuaacgaGCCCGc -3'
miRNA:   3'- -CCUUuUAaa----UGUGCACGCCGA---------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67121 0.73 0.87785
Target:  5'- --------cGCGCaGUGCGGCgGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUG-CACGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 100810 0.73 0.87785
Target:  5'- cGGAAGG---GCGCGUGCGcCUGCgCCGc -3'
miRNA:   3'- -CCUUUUaaaUGUGCACGCcGACG-GGC- -5'
23562 5' -49.5 NC_005261.1 + 74868 0.73 0.882303
Target:  5'- cGGAGGAggcggACGCGgcgGCGGCggcggagucggcgGCCCGc -3'
miRNA:   3'- -CCUUUUaaa--UGUGCa--CGCCGa------------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 433 0.72 0.904542
Target:  5'- aGGGGcggcgccgGCGCGgGCGGCgggGCCCGg -3'
miRNA:   3'- -CCUUuuaaa---UGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 33599 0.72 0.904542
Target:  5'- aGGGGcggcgccgGCGCGgGCGGCgggGCCCGg -3'
miRNA:   3'- -CCUUuuaaa---UGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 138116 0.72 0.904542
Target:  5'- aGGGGcggcgccgGCGCGgGCGGCgggGCCCGg -3'
miRNA:   3'- -CCUUuuaaa---UGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 36340 0.72 0.905845
Target:  5'- aGGAGGA---GCGCGcGCGGCUgggcGCCCu -3'
miRNA:   3'- -CCUUUUaaaUGUGCaCGCCGA----CGGGc -5'
23562 5' -49.5 NC_005261.1 + 28187 0.72 0.91831
Target:  5'- cGAGAGcc-GgAUGUGgGGCUGCCCGc -3'
miRNA:   3'- cCUUUUaaaUgUGCACgCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127708 0.72 0.92415
Target:  5'- cGGAGGAgcUGCGCGUG-GcCUGCCUGg -3'
miRNA:   3'- -CCUUUUaaAUGUGCACgCcGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 134102 0.71 0.940092
Target:  5'- --------gGCGCGUGCagGGCUGCCgGg -3'
miRNA:   3'- ccuuuuaaaUGUGCACG--CCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 29585 0.71 0.940092
Target:  5'- --------gGCGCGUGCagGGCUGCCgGg -3'
miRNA:   3'- ccuuuuaaaUGUGCACG--CCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 72683 0.71 0.944883
Target:  5'- uGGAcgccugGCACGcGCuGCUGCCCGc -3'
miRNA:   3'- -CCUuuuaaaUGUGCaCGcCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 43344 0.71 0.951157
Target:  5'- --------cGCGCGUGUGGCUgcacgcgggccgcccGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCACGCCGA---------------CGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.