miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 138116 0.72 0.904542
Target:  5'- aGGGGcggcgccgGCGCGgGCGGCgggGCCCGg -3'
miRNA:   3'- -CCUUuuaaa---UGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 137424 0.67 0.992559
Target:  5'- gGGAAGGggcGCGCGUgggggGCGGCgGCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGUGCA-----CGCCGaCGgGC- -5'
23562 5' -49.5 NC_005261.1 + 136885 0.66 0.997087
Target:  5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 136292 0.66 0.997949
Target:  5'- -------cUGCGCGccGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 135946 0.67 0.992559
Target:  5'- nGGGGAG---GCGCuG-GCGGCgccGCCCGg -3'
miRNA:   3'- -CCUUUUaaaUGUG-CaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 135907 0.7 0.960393
Target:  5'- cGAGGAcgUGCGCGUgGUGGUgcucuacgacccgcUGCCCGg -3'
miRNA:   3'- cCUUUUaaAUGUGCA-CGCCG--------------ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 135038 0.67 0.995247
Target:  5'- cGGcGAGgccgACGCcUGCGGCggcagcgGCCCGc -3'
miRNA:   3'- -CCuUUUaaa-UGUGcACGCCGa------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 134842 0.67 0.992559
Target:  5'- cGGAAGugccgGCGCGgcugGCGGCcgcGCUCGc -3'
miRNA:   3'- -CCUUUuaaa-UGUGCa---CGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 134779 0.67 0.991432
Target:  5'- --------cGCGCGgcGCGGCgGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCa-CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 134429 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 134102 0.71 0.940092
Target:  5'- --------gGCGCGUGCagGGCUGCCgGg -3'
miRNA:   3'- ccuuuuaaaUGUGCACG--CCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 133932 0.66 0.997087
Target:  5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 129218 0.67 0.993564
Target:  5'- -------cUGCugGUGCGGC-GCCUc -3'
miRNA:   3'- ccuuuuaaAUGugCACGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 129006 1.12 0.007951
Target:  5'- gGGAAAAUUUACACGUGCGGCUGCCCGu -3'
miRNA:   3'- -CCUUUUAAAUGUGCACGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127708 0.72 0.92415
Target:  5'- cGGAGGAgcUGCGCGUG-GcCUGCCUGg -3'
miRNA:   3'- -CCUUUUaaAUGUGCACgCcGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127557 0.68 0.990176
Target:  5'- cGGuug---UACGCGUGCGuCgGCCCGc -3'
miRNA:   3'- -CCuuuuaaAUGUGCACGCcGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127472 0.69 0.978886
Target:  5'- cGGggGGUcagagucccagACGCuG-GCGGCUGCCUGc -3'
miRNA:   3'- -CCuuUUAaa---------UGUG-CaCGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127374 0.7 0.965041
Target:  5'- aGGAugucgUugGCG-GCGGCgaggaGCCCGg -3'
miRNA:   3'- -CCUuuuaaAugUGCaCGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127243 0.69 0.976149
Target:  5'- cGGAGGAccagcgccagucggGCGCGgggcgGCGGCgGCCCa -3'
miRNA:   3'- -CCUUUUaaa-----------UGUGCa----CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 122448 0.67 0.994457
Target:  5'- --------cGCGCGgGCGGC-GCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.