miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 38372 0.67 0.630324
Target:  5'- gGGCGGc-CGGGAAGCGGCacc-UCGu -3'
miRNA:   3'- gCCGCCacGCCCUUCGCCGaccaAGC- -5'
23563 3' -60.6 NC_005261.1 + 1412 0.67 0.630324
Target:  5'- gCGGCGGcgGCGGG-GGCGGCg------ -3'
miRNA:   3'- -GCCGCCa-CGCCCuUCGCCGaccaagc -5'
23563 3' -60.6 NC_005261.1 + 111602 0.67 0.630324
Target:  5'- -cGCGGaGUGGGc-GCGGCUGGgcugCGg -3'
miRNA:   3'- gcCGCCaCGCCCuuCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 97975 0.67 0.629331
Target:  5'- gGaGCGGUGCccgGGGAgagugaagugggaGGCGGCgGGggCGc -3'
miRNA:   3'- gC-CGCCACG---CCCU-------------UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 125214 0.67 0.620392
Target:  5'- -cGUGGUGCuGGGggGCGcGCUcgGGcUCGc -3'
miRNA:   3'- gcCGCCACG-CCCuuCGC-CGA--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 55137 0.67 0.620392
Target:  5'- gCGGCGGcGCuGGAGGC-GCUGGaagCGc -3'
miRNA:   3'- -GCCGCCaCGcCCUUCGcCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 35164 0.67 0.619399
Target:  5'- gCGGCGGUGCugggcgccgugccGGGAcaGGC-GCUGGgcccugCGg -3'
miRNA:   3'- -GCCGCCACG-------------CCCU--UCGcCGACCaa----GC- -5'
23563 3' -60.6 NC_005261.1 + 98249 0.67 0.610467
Target:  5'- gCGGCccGGUGCGGcGcgucAGGCGGCgcgcGcGUUCGa -3'
miRNA:   3'- -GCCG--CCACGCC-C----UUCGCCGa---C-CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 70438 0.67 0.610467
Target:  5'- gGGCGGcgccgagGCGgaggaGGggGCGGCcgGGggCGg -3'
miRNA:   3'- gCCGCCa------CGC-----CCuuCGCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 31889 0.68 0.600558
Target:  5'- gCGGCGGggGCGGacgcGGCGGCgGGgcCGu -3'
miRNA:   3'- -GCCGCCa-CGCCcu--UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 28413 0.68 0.600558
Target:  5'- uCGGCGGccgccGCGgcGGAAGCGGCgccGGccgUCGc -3'
miRNA:   3'- -GCCGCCa----CGC--CCUUCGCCGa--CCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 69309 0.68 0.600558
Target:  5'- cCGGUGGcgGCGGG-AGCGGg-GGUgacggCGa -3'
miRNA:   3'- -GCCGCCa-CGCCCuUCGCCgaCCAa----GC- -5'
23563 3' -60.6 NC_005261.1 + 48443 0.68 0.600558
Target:  5'- -cGCGGUGCGuGgcGCGGCcGGcgCGg -3'
miRNA:   3'- gcCGCCACGCcCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 97750 0.68 0.600558
Target:  5'- gGGCGGgGCGGGcucGGCGGCgcggccGGcaUCGa -3'
miRNA:   3'- gCCGCCaCGCCCu--UCGCCGa-----CCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 57190 0.68 0.600558
Target:  5'- uCGGCGGgaagGgGGGggGgGGCgcgcgGGUc-- -3'
miRNA:   3'- -GCCGCCa---CgCCCuuCgCCGa----CCAagc -5'
23563 3' -60.6 NC_005261.1 + 56349 0.68 0.600558
Target:  5'- uGGCGGccGCaGGggGCGGgUGGg--- -3'
miRNA:   3'- gCCGCCa-CGcCCuuCGCCgACCaagc -5'
23563 3' -60.6 NC_005261.1 + 38253 0.68 0.59759
Target:  5'- gGGCucgcacgccagccuGG-GCuGGggGCGGCUGGUgcacgCGg -3'
miRNA:   3'- gCCG--------------CCaCGcCCuuCGCCGACCAa----GC- -5'
23563 3' -60.6 NC_005261.1 + 79687 0.68 0.590671
Target:  5'- aCGGCGcaggagccCGGGcGGCGGCUGGgcUCGa -3'
miRNA:   3'- -GCCGCcac-----GCCCuUCGCCGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 86193 0.68 0.590671
Target:  5'- gCGGCGG-GCGGGgcGgGcGUUGGccUCGu -3'
miRNA:   3'- -GCCGCCaCGCCCuuCgC-CGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 120885 0.68 0.590671
Target:  5'- gGGCGGggugcccggGCGGGgcGgGaGCUGGgcCGg -3'
miRNA:   3'- gCCGCCa--------CGCCCuuCgC-CGACCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.