miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 37360 0.66 0.679859
Target:  5'- gGGCGGUGCucgccgcccGAGGCGGCgcugUGGUacgCGg -3'
miRNA:   3'- gCCGCCACGcc-------CUUCGCCG----ACCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 8392 0.66 0.679859
Target:  5'- -cGCGGUGCuGGAGcGCGcGCUGGg--- -3'
miRNA:   3'- gcCGCCACGcCCUU-CGC-CGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 116000 0.66 0.679859
Target:  5'- gGGCGGgGCGGGGGuGCcGGCUcgaGGcUUCu -3'
miRNA:   3'- gCCGCCaCGCCCUU-CG-CCGA---CC-AAGc -5'
23563 3' -60.6 NC_005261.1 + 2595 0.66 0.670982
Target:  5'- gCGGCGGaagccgccgucggcgGCGGGGccgccgGGCGGCaUGGggCc -3'
miRNA:   3'- -GCCGCCa--------------CGCCCU------UCGCCG-ACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 107112 0.66 0.670982
Target:  5'- gCGGCGGaagccgccgucggcgGCGGGGccgccgGGCGGCaUGGggCc -3'
miRNA:   3'- -GCCGCCa--------------CGCCCU------UCGCCG-ACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 102187 0.66 0.669994
Target:  5'- gCGGUGGgcUGCGGGucGCGGgguaGGggCGg -3'
miRNA:   3'- -GCCGCC--ACGCCCuuCGCCga--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 68730 0.66 0.669994
Target:  5'- gCGGCGGgcgccgGCGGGAagaAGCGcccGCcGGggCGc -3'
miRNA:   3'- -GCCGCCa-----CGCCCU---UCGC---CGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 111085 0.66 0.669994
Target:  5'- gGGCcuGGUGUGGGggGCcggGGaCUGGg--- -3'
miRNA:   3'- gCCG--CCACGCCCuuCG---CC-GACCaagc -5'
23563 3' -60.6 NC_005261.1 + 97591 0.66 0.669994
Target:  5'- gGGCGGaGCGGGcgGAGCgGGC-GGagCGg -3'
miRNA:   3'- gCCGCCaCGCCC--UUCG-CCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 79307 0.66 0.669994
Target:  5'- gGGCGGcgUGCGcGGgcGCG-CUGGUgcgCGc -3'
miRNA:   3'- gCCGCC--ACGC-CCuuCGCcGACCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 58998 0.66 0.669006
Target:  5'- gCGGCGGUGCGccGGGcucgcccAGCGGCgccgccaGGaaCGg -3'
miRNA:   3'- -GCCGCCACGC--CCU-------UCGCCGa------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 20576 0.67 0.660101
Target:  5'- gCGGCGGggcgcuuaGCGGGGGggcGCGGCgcgGGccCGg -3'
miRNA:   3'- -GCCGCCa-------CGCCCUU---CGCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 117983 0.67 0.660101
Target:  5'- uCGGCGcccauggagcGcGCGGcGGAGCGGCUGGc--- -3'
miRNA:   3'- -GCCGC----------CaCGCC-CUUCGCCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 60511 0.67 0.650187
Target:  5'- cCGGCGccgcuugGCuGGGggGCGGC-GG-UCGa -3'
miRNA:   3'- -GCCGCca-----CG-CCCuuCGCCGaCCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 15320 0.67 0.644231
Target:  5'- uCGGC-GUGCGcuccaacgccgucccGGAGGC-GCUGGUUCu -3'
miRNA:   3'- -GCCGcCACGC---------------CCUUCGcCGACCAAGc -5'
23563 3' -60.6 NC_005261.1 + 136058 0.67 0.640258
Target:  5'- cCGGCGG-GCGGGcagggagaacaaAGGCGaGgaGGUgagCGg -3'
miRNA:   3'- -GCCGCCaCGCCC------------UUCGC-CgaCCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 67061 0.67 0.640258
Target:  5'- aGGCGGgcgcgcGCGGGGgcucgcucgGGCGGUccaUGGcgCGa -3'
miRNA:   3'- gCCGCCa-----CGCCCU---------UCGCCG---ACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 43418 0.67 0.638272
Target:  5'- gGGCGGccuccgccgccgGCGGGGAGCuGGCUcGGcgCc -3'
miRNA:   3'- gCCGCCa-----------CGCCCUUCG-CCGA-CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 78525 0.67 0.630324
Target:  5'- cCGGCGG-GCGGGucugcccgGAGCGcguGCUGGccgagggcggcUUCGa -3'
miRNA:   3'- -GCCGCCaCGCCC--------UUCGC---CGACC-----------AAGC- -5'
23563 3' -60.6 NC_005261.1 + 105929 0.67 0.630324
Target:  5'- gCGGCGGcgGCGGG-GGCGGCg------ -3'
miRNA:   3'- -GCCGCCa-CGCCCuUCGCCGaccaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.