Results 41 - 60 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23563 | 3' | -60.6 | NC_005261.1 | + | 55819 | 0.66 | 0.699468 |
Target: 5'- aCGGCGGggccggcGCGGGGGacgacggccccGCGGgCUGGgcggCGc -3' miRNA: 3'- -GCCGCCa------CGCCCUU-----------CGCC-GACCaa--GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 31116 | 0.66 | 0.699468 |
Target: 5'- uCGcCGGcGCGGuGgcGCGGCUGGgggCGc -3' miRNA: 3'- -GCcGCCaCGCC-CuuCGCCGACCaa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 28689 | 0.66 | 0.718865 |
Target: 5'- gCGGCGGUugugGCGaGGggGCccgcGGCgGGcgCGc -3' miRNA: 3'- -GCCGCCA----CGC-CCuuCG----CCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 3540 | 0.66 | 0.717901 |
Target: 5'- -cGCGGUcgcagucgcagucGuCGGGuccuGGCGGCUGGUgguUCGc -3' miRNA: 3'- gcCGCCA-------------C-GCCCu---UCGCCGACCA---AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60171 | 0.66 | 0.709197 |
Target: 5'- gGGcCGGcGCGGGGgccgGGCccgcgaccaccGGCUGGggCGg -3' miRNA: 3'- gCC-GCCaCGCCCU----UCG-----------CCGACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 51509 | 0.66 | 0.709197 |
Target: 5'- gCGGCGGacgagGCGGcGAAGCuggacgcGCUGGgcgCGu -3' miRNA: 3'- -GCCGCCa----CGCC-CUUCGc------CGACCaa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 42257 | 0.66 | 0.709197 |
Target: 5'- uCGGgGGUGauGGuggccGGCGcGCUGGggUCGa -3' miRNA: 3'- -GCCgCCACgcCCu----UCGC-CGACCa-AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 34861 | 0.66 | 0.709197 |
Target: 5'- gCGGCGGcGCgcggccgagcugGGGGAGCGGCgcgcGGa--- -3' miRNA: 3'- -GCCGCCaCG------------CCCUUCGCCGa---CCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 11755 | 0.66 | 0.709197 |
Target: 5'- uGGCGGcGCGGuacuaccgcGAGGCGagcgcGCUGGcgCGg -3' miRNA: 3'- gCCGCCaCGCC---------CUUCGC-----CGACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 102123 | 0.66 | 0.699468 |
Target: 5'- gCGGCGGUcGCGGcccgaGAGUuaaguaugcaGGCUGGgggUCGc -3' miRNA: 3'- -GCCGCCA-CGCCc----UUCG----------CCGACCa--AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 116443 | 0.66 | 0.699468 |
Target: 5'- cCGGCGGcUGCGGcGGcccgcgccgcGGCGGCUcgcccGGcgCGc -3' miRNA: 3'- -GCCGCC-ACGCC-CU----------UCGCCGA-----CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 55137 | 0.67 | 0.620392 |
Target: 5'- gCGGCGGcGCuGGAGGC-GCUGGaagCGc -3' miRNA: 3'- -GCCGCCaCGcCCUUCGcCGACCaa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 125214 | 0.67 | 0.620392 |
Target: 5'- -cGUGGUGCuGGGggGCGcGCUcgGGcUCGc -3' miRNA: 3'- gcCGCCACG-CCCuuCGC-CGA--CCaAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 78525 | 0.67 | 0.630324 |
Target: 5'- cCGGCGG-GCGGGucugcccgGAGCGcguGCUGGccgagggcggcUUCGa -3' miRNA: 3'- -GCCGCCaCGCCC--------UUCGC---CGACC-----------AAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 105929 | 0.67 | 0.630324 |
Target: 5'- gCGGCGGcgGCGGG-GGCGGCg------ -3' miRNA: 3'- -GCCGCCa-CGCCCuUCGCCGaccaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60511 | 0.67 | 0.650187 |
Target: 5'- cCGGCGccgcuugGCuGGGggGCGGC-GG-UCGa -3' miRNA: 3'- -GCCGCca-----CG-CCCuuCGCCGaCCaAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 15320 | 0.67 | 0.644231 |
Target: 5'- uCGGC-GUGCGcuccaacgccgucccGGAGGC-GCUGGUUCu -3' miRNA: 3'- -GCCGcCACGC---------------CCUUCGcCGACCAAGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 20576 | 0.67 | 0.660101 |
Target: 5'- gCGGCGGggcgcuuaGCGGGGGggcGCGGCgcgGGccCGg -3' miRNA: 3'- -GCCGCCa-------CGCCCUU---CGCCGa--CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 117983 | 0.67 | 0.660101 |
Target: 5'- uCGGCGcccauggagcGcGCGGcGGAGCGGCUGGc--- -3' miRNA: 3'- -GCCGC----------CaCGCC-CUUCGCCGACCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 70438 | 0.67 | 0.610467 |
Target: 5'- gGGCGGcgccgagGCGgaggaGGggGCGGCcgGGggCGg -3' miRNA: 3'- gCCGCCa------CGC-----CCuuCGCCGa-CCaaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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