miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 529 0.71 0.431298
Target:  5'- gGGCGG-GCGGGggGCagGGCggacggcGGcUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCG--CCGa------CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 136792 0.71 0.431298
Target:  5'- aGGCGGUGCaGGccAGUGGCgGGcUCGu -3'
miRNA:   3'- gCCGCCACGcCCu-UCGCCGaCCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 138200 0.71 0.431298
Target:  5'- gGGCGG-GCGGGggGCagGGCggacggcGGcUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCG--CCGa------CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 105046 0.71 0.431298
Target:  5'- gGGCGG-GCGGGggGCagGGCggacggcGGcUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCG--CCGa------CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 117588 0.71 0.431298
Target:  5'- cCGGCGGUGCGGGcGGCgaaccgGGCcGGcagUCc -3'
miRNA:   3'- -GCCGCCACGCCCuUCG------CCGaCCa--AGc -5'
23563 3' -60.6 NC_005261.1 + 103100 0.71 0.431298
Target:  5'- -cGCGGggGCGGGGugcgacgccgccGGCGGCUGGggggcUCGc -3'
miRNA:   3'- gcCGCCa-CGCCCU------------UCGCCGACCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 38115 0.7 0.43914
Target:  5'- gCGGcCGGUGCGGGcgccgcuGGGCGGC-GGcagCGg -3'
miRNA:   3'- -GCC-GCCACGCCC-------UUCGCCGaCCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 115946 0.7 0.440017
Target:  5'- aGGCGG-GCGGGGggGGCGGC-GGa--- -3'
miRNA:   3'- gCCGCCaCGCCCU--UCGCCGaCCaagc -5'
23563 3' -60.6 NC_005261.1 + 11429 0.7 0.440017
Target:  5'- aGGCGG-GCGGGGggGGCGGC-GGa--- -3'
miRNA:   3'- gCCGCCaCGCCCU--UCGCCGaCCaagc -5'
23563 3' -60.6 NC_005261.1 + 23998 0.7 0.448835
Target:  5'- gCGGCGGaGCgcugcugcuagGGGAGGgGGCggagcgcggGGUUCGg -3'
miRNA:   3'- -GCCGCCaCG-----------CCCUUCgCCGa--------CCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 8949 0.7 0.448835
Target:  5'- gGGCGG-GCGGG--GCGGCgcggGGgcuugUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCGCCGa---CCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 128516 0.7 0.448835
Target:  5'- gCGGCGGaGCgcugcugcuagGGGAGGgGGCggagcgcggGGUUCGg -3'
miRNA:   3'- -GCCGCCaCG-----------CCCUUCgCCGa--------CCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 32913 0.7 0.448835
Target:  5'- gGGCGcGcGUGGGggGCGGCgggcggggggGGggCGg -3'
miRNA:   3'- gCCGC-CaCGCCCuuCGCCGa---------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 12626 0.7 0.45775
Target:  5'- gGGCGG-GCGGGcAGUGGCgcuUUCGa -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaccAAGC- -5'
23563 3' -60.6 NC_005261.1 + 43038 0.7 0.45775
Target:  5'- gGGCGGcGCGGGucccAG-GGCUGGggCa -3'
miRNA:   3'- gCCGCCaCGCCCu---UCgCCGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 102574 0.7 0.45775
Target:  5'- cCGGCaGGgaGCGGGAGcGgGGCUGGggCu -3'
miRNA:   3'- -GCCG-CCa-CGCCCUU-CgCCGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 22138 0.7 0.466758
Target:  5'- aCGGCGGgggGgGGGAAGgGGCaUGGc--- -3'
miRNA:   3'- -GCCGCCa--CgCCCUUCgCCG-ACCaagc -5'
23563 3' -60.6 NC_005261.1 + 126656 0.7 0.466758
Target:  5'- aCGGCGGgggGgGGGAAGgGGCaUGGc--- -3'
miRNA:   3'- -GCCGCCa--CgCCCUUCgCCG-ACCaagc -5'
23563 3' -60.6 NC_005261.1 + 22728 0.7 0.466758
Target:  5'- aGGUGGUGCGGGGgcuGCGGCg------ -3'
miRNA:   3'- gCCGCCACGCCCUu--CGCCGaccaagc -5'
23563 3' -60.6 NC_005261.1 + 33165 0.7 0.475858
Target:  5'- uCGGCGGacccUGcCGGGGAG-GGCUGGggaggggCGg -3'
miRNA:   3'- -GCCGCC----AC-GCCCUUCgCCGACCaa-----GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.