miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 22728 0.7 0.466758
Target:  5'- aGGUGGUGCGGGGgcuGCGGCg------ -3'
miRNA:   3'- gCCGCCACGCCCUu--CGCCGaccaagc -5'
23563 3' -60.6 NC_005261.1 + 23628 0.72 0.373235
Target:  5'- gGGCGcG-GCGGGGgucgGGCGGCUGGa--- -3'
miRNA:   3'- gCCGC-CaCGCCCU----UCGCCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 23787 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 23844 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 23998 0.7 0.448835
Target:  5'- gCGGCGGaGCgcugcugcuagGGGAGGgGGCggagcgcggGGUUCGg -3'
miRNA:   3'- -GCCGCCaCG-----------CCCUUCgCCGa--------CCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 24371 0.69 0.531197
Target:  5'- uCGGCGGUGCucccgguGGGcucgucGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCACG-------CCCu-----UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 26597 0.72 0.350029
Target:  5'- aGGCGGcgGCGGGcGGCGGC-GGcaCGg -3'
miRNA:   3'- gCCGCCa-CGCCCuUCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 26876 0.72 0.342525
Target:  5'- gGGCGGggguggGUGGGggGgGGCgGGggCGc -3'
miRNA:   3'- gCCGCCa-----CGCCCuuCgCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 28413 0.68 0.600558
Target:  5'- uCGGCGGccgccGCGgcGGAAGCGGCgccGGccgUCGc -3'
miRNA:   3'- -GCCGCCa----CGC--CCUUCGCCGa--CCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 28689 0.66 0.718865
Target:  5'- gCGGCGGUugugGCGaGGggGCccgcGGCgGGcgCGc -3'
miRNA:   3'- -GCCGCCA----CGC-CCuuCG----CCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 29419 0.73 0.327868
Target:  5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 30106 0.73 0.31368
Target:  5'- uGGCGGUgGCGGGcGGCGuGCU-GUUCa -3'
miRNA:   3'- gCCGCCA-CGCCCuUCGC-CGAcCAAGc -5'
23563 3' -60.6 NC_005261.1 + 31116 0.66 0.699468
Target:  5'- uCGcCGGcGCGGuGgcGCGGCUGGgggCGc -3'
miRNA:   3'- -GCcGCCaCGCC-CuuCGCCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 31889 0.68 0.600558
Target:  5'- gCGGCGGggGCGGacgcGGCGGCgGGgcCGu -3'
miRNA:   3'- -GCCGCCa-CGCCcu--UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 32896 0.66 0.718865
Target:  5'- aCGGCcGUGgCGGuGGGCGGCgccGGggCGg -3'
miRNA:   3'- -GCCGcCAC-GCCcUUCGCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 32913 0.7 0.448835
Target:  5'- gGGCGcGcGUGGGggGCGGCgggcggggggGGggCGg -3'
miRNA:   3'- gCCGC-CaCGCCCuuCGCCGa---------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 33165 0.7 0.475858
Target:  5'- uCGGCGGacccUGcCGGGGAG-GGCUGGggaggggCGg -3'
miRNA:   3'- -GCCGCC----AC-GCCCUUCgCCGACCaa-----GC- -5'
23563 3' -60.6 NC_005261.1 + 33724 0.66 0.715005
Target:  5'- gGGCGGUGgGGGccugccccucgcGCGGCgccgGGgcCGg -3'
miRNA:   3'- gCCGCCACgCCCuu----------CGCCGa---CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 33798 0.66 0.689686
Target:  5'- cCGcGCGGgcgGCGGGcuugucuuuGGGCGGCcggGGggCGc -3'
miRNA:   3'- -GC-CGCCa--CGCCC---------UUCGCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 34329 0.68 0.570989
Target:  5'- uGGCGGcGCGGGuGGCccGGCUuGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCCuUCG--CCGA-CCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.