miRNA display CGI


Results 21 - 40 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 11926 0.66 0.699468
Target:  5'- cCGGCGGcUGCGGcGGcccgcgccgcGGCGGCUcgcccGGcgCGc -3'
miRNA:   3'- -GCCGCC-ACGCC-CU----------UCGCCGA-----CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 12064 0.74 0.293278
Target:  5'- cCGGCGGUGCGGc-AGCGGCguccgcgccGGggCGg -3'
miRNA:   3'- -GCCGCCACGCCcuUCGCCGa--------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 12626 0.7 0.45775
Target:  5'- gGGCGG-GCGGGcAGUGGCgcuUUCGa -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaccAAGC- -5'
23563 3' -60.6 NC_005261.1 + 12771 0.69 0.532156
Target:  5'- gCGGCGGUgGCGGGGggcucgucGGCGaGCUcGUcgUCGg -3'
miRNA:   3'- -GCCGCCA-CGCCCU--------UCGC-CGAcCA--AGC- -5'
23563 3' -60.6 NC_005261.1 + 13091 0.69 0.503666
Target:  5'- uCGGCGGgcgGCGGGcu-CGGCUcGGgggcgUCGg -3'
miRNA:   3'- -GCCGCCa--CGCCCuucGCCGA-CCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 13122 0.66 0.728462
Target:  5'- nGGCGGccGCGGGgcGCGugUGG-UCGg -3'
miRNA:   3'- gCCGCCa-CGCCCuuCGCcgACCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 13700 0.68 0.580812
Target:  5'- gGGCGGgGCGGGcuGGgGGCgGGggUGg -3'
miRNA:   3'- gCCGCCaCGCCCu-UCgCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 15027 0.69 0.513093
Target:  5'- uCGGCgGGUGcCGGGGgcguAGCGGggGGggUCGg -3'
miRNA:   3'- -GCCG-CCAC-GCCCU----UCGCCgaCCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 15320 0.67 0.644231
Target:  5'- uCGGC-GUGCGcuccaacgccgucccGGAGGC-GCUGGUUCu -3'
miRNA:   3'- -GCCGcCACGC---------------CCUUCGcCGACCAAGc -5'
23563 3' -60.6 NC_005261.1 + 16261 0.72 0.373235
Target:  5'- gGGCGGcGCuGGAgcgcggcacGGCGaGCUGGUUCa -3'
miRNA:   3'- gCCGCCaCGcCCU---------UCGC-CGACCAAGc -5'
23563 3' -60.6 NC_005261.1 + 16410 0.74 0.278349
Target:  5'- gGGCGGUGCGGGAgaggcccccucgacGGCgGGCggcGGcUCGu -3'
miRNA:   3'- gCCGCCACGCCCU--------------UCG-CCGa--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 16605 0.76 0.20175
Target:  5'- gCGGCGGccgccgagcgGCGGGAGGCGGC-GGUguaCGa -3'
miRNA:   3'- -GCCGCCa---------CGCCCUUCGCCGaCCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 17711 0.68 0.580812
Target:  5'- uGGCGGUcGCGGaGAacucgggcAGCGGCgccgGGUa-- -3'
miRNA:   3'- gCCGCCA-CGCC-CU--------UCGCCGa---CCAagc -5'
23563 3' -60.6 NC_005261.1 + 18051 0.69 0.513093
Target:  5'- aGGuUGG-GCGGGuGGGCGGUUGGcgUCGc -3'
miRNA:   3'- gCC-GCCaCGCCC-UUCGCCGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 18497 0.75 0.255613
Target:  5'- gGGCGGggcgcGCGGGAAGgGGUUGGg--- -3'
miRNA:   3'- gCCGCCa----CGCCCUUCgCCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 19711 0.66 0.689686
Target:  5'- uCGGCGGgGCaGGGcgccucgccGAGCGGCgccagGGUcCGc -3'
miRNA:   3'- -GCCGCCaCG-CCC---------UUCGCCGa----CCAaGC- -5'
23563 3' -60.6 NC_005261.1 + 20576 0.67 0.660101
Target:  5'- gCGGCGGggcgcuuaGCGGGGGggcGCGGCgcgGGccCGg -3'
miRNA:   3'- -GCCGCCa-------CGCCCUU---CGCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 21625 0.69 0.502727
Target:  5'- gGGCGGUGCGaGGGcuGCGGCagcaucuuggcggUGGccUCGg -3'
miRNA:   3'- gCCGCCACGC-CCUu-CGCCG-------------ACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 22138 0.7 0.466758
Target:  5'- aCGGCGGgggGgGGGAAGgGGCaUGGc--- -3'
miRNA:   3'- -GCCGCCa--CgCCCUUCgCCG-ACCaagc -5'
23563 3' -60.6 NC_005261.1 + 22341 0.66 0.728462
Target:  5'- aCGGCGGgGa-GGAGGCGGCgagGGa--- -3'
miRNA:   3'- -GCCGCCaCgcCCUUCGCCGa--CCaagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.