miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 260 0.71 0.422681
Target:  5'- gCGGCGGcUGCGGc-GGCGGCUGcggCGg -3'
miRNA:   3'- -GCCGCC-ACGCCcuUCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 296 0.71 0.422681
Target:  5'- gCGGCGGcUGCGGc-GGCGGCUGcggCGg -3'
miRNA:   3'- -GCCGCC-ACGCCcuUCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 321 0.69 0.503666
Target:  5'- nGGCGGcUGCGGc-GGCGGCUGcggCGg -3'
miRNA:   3'- gCCGCC-ACGCCcuUCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 369 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 529 0.71 0.431298
Target:  5'- gGGCGG-GCGGGggGCagGGCggacggcGGcUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCG--CCGa------CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 1007 0.79 0.12619
Target:  5'- gGGCGGgggGCGGGggGCGGgUGGgcuuuugCGg -3'
miRNA:   3'- gCCGCCa--CGCCCuuCGCCgACCaa-----GC- -5'
23563 3' -60.6 NC_005261.1 + 1044 0.69 0.532156
Target:  5'- gCGGCGGgcgGCGGcGuuAGCGGCgcggGGggCu -3'
miRNA:   3'- -GCCGCCa--CGCC-Cu-UCGCCGa---CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 1412 0.67 0.630324
Target:  5'- gCGGCGGcgGCGGG-GGCGGCg------ -3'
miRNA:   3'- -GCCGCCa-CGCCCuUCGCCGaccaagc -5'
23563 3' -60.6 NC_005261.1 + 2595 0.66 0.670982
Target:  5'- gCGGCGGaagccgccgucggcgGCGGGGccgccgGGCGGCaUGGggCc -3'
miRNA:   3'- -GCCGCCa--------------CGCCCU------UCGCCG-ACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 3540 0.66 0.717901
Target:  5'- -cGCGGUcgcagucgcagucGuCGGGuccuGGCGGCUGGUgguUCGc -3'
miRNA:   3'- gcCGCCA-------------C-GCCCu---UCGCCGACCA---AGC- -5'
23563 3' -60.6 NC_005261.1 + 5247 0.68 0.580812
Target:  5'- -aGCGGUGCGGGucGCGGUgcgcGGcgaCGa -3'
miRNA:   3'- gcCGCCACGCCCuuCGCCGa---CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 7961 0.68 0.589684
Target:  5'- uGGCGGgggcgcGCGGGAcgcccccaguacgAGCcGCUGGcgCGg -3'
miRNA:   3'- gCCGCCa-----CGCCCU-------------UCGcCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 8392 0.66 0.679859
Target:  5'- -cGCGGUGCuGGAGcGCGcGCUGGg--- -3'
miRNA:   3'- gcCGCCACGcCCUU-CGC-CGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 8949 0.7 0.448835
Target:  5'- gGGCGG-GCGGG--GCGGCgcggGGgcuugUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCGCCGa---CCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 9511 0.66 0.728462
Target:  5'- aCGGCGG-GCGGGcGG-GGCccgGGcgCGc -3'
miRNA:   3'- -GCCGCCaCGCCCuUCgCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 9620 0.72 0.357649
Target:  5'- gGGUGGgcagGCGGGGguGGgGGCUGGgugggCGg -3'
miRNA:   3'- gCCGCCa---CGCCCU--UCgCCGACCaa---GC- -5'
23563 3' -60.6 NC_005261.1 + 10028 0.66 0.689686
Target:  5'- -aGCGGUGCGGGG-GCGG--GGUUg- -3'
miRNA:   3'- gcCGCCACGCCCUuCGCCgaCCAAgc -5'
23563 3' -60.6 NC_005261.1 + 11429 0.7 0.440017
Target:  5'- aGGCGG-GCGGGGggGGCGGC-GGa--- -3'
miRNA:   3'- gCCGCCaCGCCCU--UCGCCGaCCaagc -5'
23563 3' -60.6 NC_005261.1 + 11483 0.66 0.679859
Target:  5'- gGGCGGgGCGGGGGuGCcGGCUcgaGGcUUCu -3'
miRNA:   3'- gCCGCCaCGCCCUU-CG-CCGA---CC-AAGc -5'
23563 3' -60.6 NC_005261.1 + 11755 0.66 0.709197
Target:  5'- uGGCGGcGCGGuacuaccgcGAGGCGagcgcGCUGGcgCGg -3'
miRNA:   3'- gCCGCCaCGCC---------CUUCGC-----CGACCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.