miRNA display CGI


Results 1 - 20 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 126698 1.08 0.001331
Target:  5'- cCGGCGGUGCGGGAAGCGGCUGGUUCGc -3'
miRNA:   3'- -GCCGCCACGCCCUUCGCCGACCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 127644 0.8 0.108379
Target:  5'- gCGGCGGcGcCGGGggGCGcGCgGGUUCGg -3'
miRNA:   3'- -GCCGCCaC-GCCCuuCGC-CGaCCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 1007 0.79 0.12619
Target:  5'- gGGCGGgggGCGGGggGCGGgUGGgcuuuugCGg -3'
miRNA:   3'- gCCGCCa--CGCCCuuCGCCgACCaa-----GC- -5'
23563 3' -60.6 NC_005261.1 + 105525 0.79 0.12619
Target:  5'- gGGCGGgggGCGGGggGCGGgUGGgcuuuugCGg -3'
miRNA:   3'- gCCGCCa--CGCCCuuCGCCgACCaa-----GC- -5'
23563 3' -60.6 NC_005261.1 + 123168 0.77 0.178704
Target:  5'- gGGCGGgcgcGCGGGcguGGUGGCUGGUgugggCGg -3'
miRNA:   3'- gCCGCCa---CGCCCu--UCGCCGACCAa----GC- -5'
23563 3' -60.6 NC_005261.1 + 103610 0.76 0.196943
Target:  5'- gCGGCGGcagcGCGGGAGGCGGCggcGGccaUCGc -3'
miRNA:   3'- -GCCGCCa---CGCCCUUCGCCGa--CCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 16605 0.76 0.20175
Target:  5'- gCGGCGGccgccgagcgGCGGGAGGCGGC-GGUguaCGa -3'
miRNA:   3'- -GCCGCCa---------CGCCCUUCGCCGaCCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 104778 0.76 0.222007
Target:  5'- gCGGCGGcUGCGGGGcggcugcggcGGCGGCUGcggCGg -3'
miRNA:   3'- -GCCGCC-ACGCCCU----------UCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 127748 0.75 0.23277
Target:  5'- gCGGCGGgaGCGGGccGCGGCgGGcgCGa -3'
miRNA:   3'- -GCCGCCa-CGCCCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 18497 0.75 0.255613
Target:  5'- gGGCGGggcgcGCGGGAAGgGGUUGGg--- -3'
miRNA:   3'- gCCGCCa----CGCCCUUCgCCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 16410 0.74 0.278349
Target:  5'- gGGCGGUGCGGGAgaggcccccucgacGGCgGGCggcGGcUCGu -3'
miRNA:   3'- gCCGCCACGCCCU--------------UCG-CCGa--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 12064 0.74 0.293278
Target:  5'- cCGGCGGUGCGGc-AGCGGCguccgcgccGGggCGg -3'
miRNA:   3'- -GCCGCCACGCCcuUCGCCGa--------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 116582 0.74 0.293278
Target:  5'- cCGGCGGUGCGGc-AGCGGCguccgcgccGGggCGg -3'
miRNA:   3'- -GCCGCCACGCCcuUCGCCGa--------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 34922 0.73 0.299962
Target:  5'- gGGCGcGgccacGCGGGggGCGGCcGGcgCGa -3'
miRNA:   3'- gCCGC-Ca----CGCCCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 30106 0.73 0.31368
Target:  5'- uGGCGGUgGCGGGcGGCGuGCU-GUUCa -3'
miRNA:   3'- gCCGCCA-CGCCCuUCGC-CGAcCAAGc -5'
23563 3' -60.6 NC_005261.1 + 79909 0.73 0.320715
Target:  5'- aGGCGGUGCuc-GGGCGGCUGGgcCGc -3'
miRNA:   3'- gCCGCCACGcccUUCGCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 29419 0.73 0.327868
Target:  5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 133936 0.73 0.327868
Target:  5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 131393 0.72 0.342525
Target:  5'- gGGCGGggguggGUGGGggGgGGCgGGggCGc -3'
miRNA:   3'- gCCGCCa-----CGCCCuuCgCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 26876 0.72 0.342525
Target:  5'- gGGCGGggguggGUGGGggGgGGCgGGggCGc -3'
miRNA:   3'- gCCGCCa-----CGCCCuuCgCCGaCCaaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.