miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 103100 0.71 0.431298
Target:  5'- -cGCGGggGCGGGGugcgacgccgccGGCGGCUGGggggcUCGc -3'
miRNA:   3'- gcCGCCa-CGCCCU------------UCGCCGACCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 16261 0.72 0.373235
Target:  5'- gGGCGGcGCuGGAgcgcggcacGGCGaGCUGGUUCa -3'
miRNA:   3'- gCCGCCaCGcCCU---------UCGC-CGACCAAGc -5'
23563 3' -60.6 NC_005261.1 + 60759 0.72 0.381199
Target:  5'- gGGCGG-GCGGGGGcGCGGCUGc---- -3'
miRNA:   3'- gCCGCCaCGCCCUU-CGCCGACcaagc -5'
23563 3' -60.6 NC_005261.1 + 137430 0.72 0.381199
Target:  5'- gGGCGcGcGUGGGggGCGGC-GGcgCGg -3'
miRNA:   3'- gCCGC-CaCGCCCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 91259 0.71 0.414169
Target:  5'- cCGGCGG-GCGGcGGcAGCGGCgacGGcgCGg -3'
miRNA:   3'- -GCCGCCaCGCC-CU-UCGCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 100685 0.71 0.422681
Target:  5'- uGGCGGcgGCGGG-AGCGGCgcgcGGaccUCGu -3'
miRNA:   3'- gCCGCCa-CGCCCuUCGCCGa---CCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 104825 0.71 0.422681
Target:  5'- gCGGCGGcUGCGGc-GGCGGCUGcggCGg -3'
miRNA:   3'- -GCCGCC-ACGCCcuUCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 105046 0.71 0.431298
Target:  5'- gGGCGG-GCGGGggGCagGGCggacggcGGcUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCG--CCGa------CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 117588 0.71 0.431298
Target:  5'- cCGGCGGUGCGGGcGGCgaaccgGGCcGGcagUCc -3'
miRNA:   3'- -GCCGCCACGCCCuUCG------CCGaCCa--AGc -5'
23563 3' -60.6 NC_005261.1 + 128145 0.72 0.373235
Target:  5'- gGGCGcG-GCGGGGgucgGGCGGCUGGa--- -3'
miRNA:   3'- gCCGC-CaCGCCCU----UCGCCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 114137 0.72 0.357649
Target:  5'- gGGUGGgcagGCGGGGguGGgGGCUGGgugggCGg -3'
miRNA:   3'- gCCGCCa---CGCCCU--UCgCCGACCaa---GC- -5'
23563 3' -60.6 NC_005261.1 + 26597 0.72 0.350029
Target:  5'- aGGCGGcgGCGGGcGGCGGC-GGcaCGg -3'
miRNA:   3'- gCCGCCa-CGCCCuUCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 16605 0.76 0.20175
Target:  5'- gCGGCGGccgccgagcgGCGGGAGGCGGC-GGUguaCGa -3'
miRNA:   3'- -GCCGCCa---------CGCCCUUCGCCGaCCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 104778 0.76 0.222007
Target:  5'- gCGGCGGcUGCGGGGcggcugcggcGGCGGCUGcggCGg -3'
miRNA:   3'- -GCCGCC-ACGCCCU----------UCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 18497 0.75 0.255613
Target:  5'- gGGCGGggcgcGCGGGAAGgGGUUGGg--- -3'
miRNA:   3'- gCCGCCa----CGCCCUUCgCCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 116582 0.74 0.293278
Target:  5'- cCGGCGGUGCGGc-AGCGGCguccgcgccGGggCGg -3'
miRNA:   3'- -GCCGCCACGCCcuUCGCCGa--------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 30106 0.73 0.31368
Target:  5'- uGGCGGUgGCGGGcGGCGuGCU-GUUCa -3'
miRNA:   3'- gCCGCCA-CGCCCuUCGC-CGAcCAAGc -5'
23563 3' -60.6 NC_005261.1 + 79909 0.73 0.320715
Target:  5'- aGGCGGUGCuc-GGGCGGCUGGgcCGc -3'
miRNA:   3'- gCCGCCACGcccUUCGCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 133936 0.73 0.327868
Target:  5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 131393 0.72 0.342525
Target:  5'- gGGCGGggguggGUGGGggGgGGCgGGggCGc -3'
miRNA:   3'- gCCGCCa-----CGCCCuuCgCCGaCCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.