miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 134207 0.66 0.728462
Target:  5'- uCGGCGc-GCGGGucgcGGCGGCcGGcagcgUCGg -3'
miRNA:   3'- -GCCGCcaCGCCCu---UCGCCGaCCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 111085 0.66 0.669994
Target:  5'- gGGCcuGGUGUGGGggGCcggGGaCUGGg--- -3'
miRNA:   3'- gCCG--CCACGCCCuuCG---CC-GACCaagc -5'
23563 3' -60.6 NC_005261.1 + 58998 0.66 0.669006
Target:  5'- gCGGCGGUGCGccGGGcucgcccAGCGGCgccgccaGGaaCGg -3'
miRNA:   3'- -GCCGCCACGC--CCU-------UCGCCGa------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 126698 1.08 0.001331
Target:  5'- cCGGCGGUGCGGGAAGCGGCUGGUUCGc -3'
miRNA:   3'- -GCCGCCACGCCCUUCGCCGACCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 33724 0.66 0.715005
Target:  5'- gGGCGGUGgGGGccugccccucgcGCGGCgccgGGgcCGg -3'
miRNA:   3'- gCCGCCACgCCCuu----------CGCCGa---CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 49128 0.66 0.709197
Target:  5'- gCGGCGG-GCGGGAcccccGCGcGCaGGUa-- -3'
miRNA:   3'- -GCCGCCaCGCCCUu----CGC-CGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 11926 0.66 0.699468
Target:  5'- cCGGCGGcUGCGGcGGcccgcgccgcGGCGGCUcgcccGGcgCGc -3'
miRNA:   3'- -GCCGCC-ACGCC-CU----------UCGCCGA-----CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 67105 0.66 0.689686
Target:  5'- -cGCGGUGCGGGcGGCGcGCgcaGUgCGg -3'
miRNA:   3'- gcCGCCACGCCCuUCGC-CGac-CAaGC- -5'
23563 3' -60.6 NC_005261.1 + 118921 0.66 0.687724
Target:  5'- cCGGCGccGCGGGcgcggcgccgcGCGGCUGGccgCGg -3'
miRNA:   3'- -GCCGCcaCGCCCuu---------CGCCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 68730 0.66 0.669994
Target:  5'- gCGGCGGgcgccgGCGGGAagaAGCGcccGCcGGggCGc -3'
miRNA:   3'- -GCCGCCa-----CGCCCU---UCGC---CGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 37360 0.66 0.679859
Target:  5'- gGGCGGUGCucgccgcccGAGGCGGCgcugUGGUacgCGg -3'
miRNA:   3'- gCCGCCACGcc-------CUUCGCCG----ACCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 54355 0.66 0.689686
Target:  5'- uGGCcagucccaGGUccGCGGGcAGCGGCUcGGggCGc -3'
miRNA:   3'- gCCG--------CCA--CGCCCuUCGCCGA-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 13122 0.66 0.728462
Target:  5'- nGGCGGccGCGGGgcGCGugUGG-UCGg -3'
miRNA:   3'- gCCGCCa-CGCCCuuCGCcgACCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 11483 0.66 0.679859
Target:  5'- gGGCGGgGCGGGGGuGCcGGCUcgaGGcUUCu -3'
miRNA:   3'- gCCGCCaCGCCCUU-CG-CCGA---CC-AAGc -5'
23563 3' -60.6 NC_005261.1 + 72617 0.66 0.725591
Target:  5'- gGGCGG-GCGGGcgcagGGGCGGCUuuauaguccccuggGGgccgccUCGg -3'
miRNA:   3'- gCCGCCaCGCCC-----UUCGCCGA--------------CCa-----AGC- -5'
23563 3' -60.6 NC_005261.1 + 33798 0.66 0.689686
Target:  5'- cCGcGCGGgcgGCGGGcuugucuuuGGGCGGCcggGGggCGc -3'
miRNA:   3'- -GC-CGCCa--CGCCC---------UUCGCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 2595 0.66 0.670982
Target:  5'- gCGGCGGaagccgccgucggcgGCGGGGccgccgGGCGGCaUGGggCc -3'
miRNA:   3'- -GCCGCCa--------------CGCCCU------UCGCCG-ACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 97591 0.66 0.669994
Target:  5'- gGGCGGaGCGGGcgGAGCgGGC-GGagCGg -3'
miRNA:   3'- gCCGCCaCGCCC--UUCG-CCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 39375 0.66 0.718865
Target:  5'- uCGGCGGc-CGGGGagGGCGGCccUGGcggCGa -3'
miRNA:   3'- -GCCGCCacGCCCU--UCGCCG--ACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 65791 0.66 0.709197
Target:  5'- gCGGCGGgaacauccGCGGGucggggugcccGGGCGGC-GGcgCGa -3'
miRNA:   3'- -GCCGCCa-------CGCCC-----------UUCGCCGaCCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.