miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 43418 0.67 0.638272
Target:  5'- gGGCGGccuccgccgccgGCGGGGAGCuGGCUcGGcgCc -3'
miRNA:   3'- gCCGCCa-----------CGCCCUUCG-CCGA-CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 58998 0.66 0.669006
Target:  5'- gCGGCGGUGCGccGGGcucgcccAGCGGCgccgccaGGaaCGg -3'
miRNA:   3'- -GCCGCCACGC--CCU-------UCGCCGa------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 54355 0.66 0.689686
Target:  5'- uGGCcagucccaGGUccGCGGGcAGCGGCUcGGggCGc -3'
miRNA:   3'- gCCG--------CCA--CGCCCuUCGCCGA-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 39375 0.66 0.718865
Target:  5'- uCGGCGGc-CGGGGagGGCGGCccUGGcggCGa -3'
miRNA:   3'- -GCCGCCacGCCCU--UCGCCG--ACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 128886 0.68 0.590671
Target:  5'- aGGCGGgggccggGUGGGAGGCgGGCg---UCGa -3'
miRNA:   3'- gCCGCCa------CGCCCUUCG-CCGaccaAGC- -5'
23563 3' -60.6 NC_005261.1 + 98249 0.67 0.610467
Target:  5'- gCGGCccGGUGCGGcGcgucAGGCGGCgcgcGcGUUCGa -3'
miRNA:   3'- -GCCG--CCACGCC-C----UUCGCCGa---C-CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 111085 0.66 0.669994
Target:  5'- gGGCcuGGUGUGGGggGCcggGGaCUGGg--- -3'
miRNA:   3'- gCCG--CCACGCCCuuCG---CC-GACCaagc -5'
23563 3' -60.6 NC_005261.1 + 72617 0.66 0.725591
Target:  5'- gGGCGG-GCGGGcgcagGGGCGGCUuuauaguccccuggGGgccgccUCGg -3'
miRNA:   3'- gCCGCCaCGCCC-----UUCGCCGA--------------CCa-----AGC- -5'
23563 3' -60.6 NC_005261.1 + 97975 0.67 0.629331
Target:  5'- gGaGCGGUGCccgGGGAgagugaagugggaGGCGGCgGGggCGc -3'
miRNA:   3'- gC-CGCCACG---CCCU-------------UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 13122 0.66 0.728462
Target:  5'- nGGCGGccGCGGGgcGCGugUGG-UCGg -3'
miRNA:   3'- gCCGCCa-CGCCCuuCGCcgACCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 97591 0.66 0.669994
Target:  5'- gGGCGGaGCGGGcgGAGCgGGC-GGagCGg -3'
miRNA:   3'- gCCGCCaCGCCC--UUCG-CCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 111602 0.67 0.630324
Target:  5'- -cGCGGaGUGGGc-GCGGCUGGgcugCGg -3'
miRNA:   3'- gcCGCCaCGCCCuuCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 11483 0.66 0.679859
Target:  5'- gGGCGGgGCGGGGGuGCcGGCUcgaGGcUUCu -3'
miRNA:   3'- gCCGCCaCGCCCUU-CG-CCGA---CC-AAGc -5'
23563 3' -60.6 NC_005261.1 + 118921 0.66 0.687724
Target:  5'- cCGGCGccGCGGGcgcggcgccgcGCGGCUGGccgCGg -3'
miRNA:   3'- -GCCGCcaCGCCCuu---------CGCCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 11926 0.66 0.699468
Target:  5'- cCGGCGGcUGCGGcGGcccgcgccgcGGCGGCUcgcccGGcgCGc -3'
miRNA:   3'- -GCCGCC-ACGCC-CU----------UCGCCGA-----CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 33724 0.66 0.715005
Target:  5'- gGGCGGUGgGGGccugccccucgcGCGGCgccgGGgcCGg -3'
miRNA:   3'- gCCGCCACgCCCuu----------CGCCGa---CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 13700 0.68 0.580812
Target:  5'- gGGCGGgGCGGGcuGGgGGCgGGggUGg -3'
miRNA:   3'- gCCGCCaCGCCCu-UCgCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 56117 0.68 0.584752
Target:  5'- gCGGCGGgagcgcgccgcaggGCGGGggGCgcgGGCcgagGGUggCGg -3'
miRNA:   3'- -GCCGCCa-------------CGCCCuuCG---CCGa---CCAa-GC- -5'
23563 3' -60.6 NC_005261.1 + 57190 0.68 0.600558
Target:  5'- uCGGCGGgaagGgGGGggGgGGCgcgcgGGUc-- -3'
miRNA:   3'- -GCCGCCa---CgCCCuuCgCCGa----CCAagc -5'
23563 3' -60.6 NC_005261.1 + 69309 0.68 0.600558
Target:  5'- cCGGUGGcgGCGGG-AGCGGg-GGUgacggCGa -3'
miRNA:   3'- -GCCGCCa-CGCCCuUCGCCgaCCAa----GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.