miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 138200 0.71 0.431298
Target:  5'- gGGCGG-GCGGGggGCagGGCggacggcGGcUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCG--CCGa------CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 138040 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 137979 0.71 0.422681
Target:  5'- gCGGCGGcUGCGGc-GGCGGCUGcggCGg -3'
miRNA:   3'- -GCCGCC-ACGCCcuUCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 137943 0.71 0.422681
Target:  5'- gCGGCGGcUGCGGc-GGCGGCUGcggCGg -3'
miRNA:   3'- -GCCGCC-ACGCCcuUCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 137430 0.72 0.381199
Target:  5'- gGGCGcGcGUGGGggGCGGC-GGcgCGg -3'
miRNA:   3'- gCCGC-CaCGCCCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 136792 0.71 0.431298
Target:  5'- aGGCGGUGCaGGccAGUGGCgGGcUCGu -3'
miRNA:   3'- gCCGCCACGcCCu-UCGCCGaCCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 136058 0.67 0.640258
Target:  5'- cCGGCGG-GCGGGcagggagaacaaAGGCGaGgaGGUgagCGg -3'
miRNA:   3'- -GCCGCCaCGCCC------------UUCGC-CgaCCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 134207 0.66 0.728462
Target:  5'- uCGGCGc-GCGGGucgcGGCGGCcGGcagcgUCGg -3'
miRNA:   3'- -GCCGCcaCGCCCu---UCGCCGaCCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 133936 0.73 0.327868
Target:  5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 131393 0.72 0.342525
Target:  5'- gGGCGGggguggGUGGGggGgGGCgGGggCGc -3'
miRNA:   3'- gCCGCCa-----CGCCCuuCgCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 129648 0.68 0.561205
Target:  5'- aCGGUGGcgGCGGc-GGCGGCaGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128888 0.69 0.531197
Target:  5'- uCGGCGGUGCucccgguGGGcucgucGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCACG-------CCCu-----UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128886 0.68 0.590671
Target:  5'- aGGCGGgggccggGUGGGAGGCgGGCg---UCGa -3'
miRNA:   3'- gCCGCCa------CGCCCUUCG-CCGaccaAGC- -5'
23563 3' -60.6 NC_005261.1 + 128516 0.7 0.448835
Target:  5'- gCGGCGGaGCgcugcugcuagGGGAGGgGGCggagcgcggGGUUCGg -3'
miRNA:   3'- -GCCGCCaCG-----------CCCUUCgCCGa--------CCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 128361 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128304 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128145 0.72 0.373235
Target:  5'- gGGCGcG-GCGGGGgucgGGCGGCUGGa--- -3'
miRNA:   3'- gCCGC-CaCGCCCU----UCGCCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 128070 0.71 0.405763
Target:  5'- uGGCGGgcggGCGGGcGAGCGaGCgGGUUa- -3'
miRNA:   3'- gCCGCCa---CGCCC-UUCGC-CGaCCAAgc -5'
23563 3' -60.6 NC_005261.1 + 127748 0.75 0.23277
Target:  5'- gCGGCGGgaGCGGGccGCGGCgGGcgCGa -3'
miRNA:   3'- -GCCGCCa-CGCCCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 127644 0.8 0.108379
Target:  5'- gCGGCGGcGcCGGGggGCGcGCgGGUUCGg -3'
miRNA:   3'- -GCCGCCaC-GCCCuuCGC-CGaCCAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.