miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 127313 0.68 0.555357
Target:  5'- uGGCGGUggggcccugccgcccGCGGGGgccggAGCGGC-GGggCGc -3'
miRNA:   3'- gCCGCCA---------------CGCCCU-----UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 126698 1.08 0.001331
Target:  5'- cCGGCGGUGCGGGAAGCGGCUGGUUCGc -3'
miRNA:   3'- -GCCGCCACGCCCUUCGCCGACCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 126656 0.7 0.466758
Target:  5'- aCGGCGGgggGgGGGAAGgGGCaUGGc--- -3'
miRNA:   3'- -GCCGCCa--CgCCCUUCgCCG-ACCaagc -5'
23563 3' -60.6 NC_005261.1 + 125214 0.67 0.620392
Target:  5'- -cGUGGUGCuGGGggGCGcGCUcgGGcUCGc -3'
miRNA:   3'- gcCGCCACG-CCCuuCGC-CGA--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 123168 0.77 0.178704
Target:  5'- gGGCGGgcgcGCGGGcguGGUGGCUGGUgugggCGg -3'
miRNA:   3'- gCCGCCa---CGCCCu--UCGCCGACCAa----GC- -5'
23563 3' -60.6 NC_005261.1 + 121896 0.66 0.718865
Target:  5'- cCGGCGG-GCaGGAgaccGGCGGCgagGGg--- -3'
miRNA:   3'- -GCCGCCaCGcCCU----UCGCCGa--CCaagc -5'
23563 3' -60.6 NC_005261.1 + 121792 0.69 0.522591
Target:  5'- cCGGCGGgcuggGCaGGggGCgcguGGCUGGgcucugCGg -3'
miRNA:   3'- -GCCGCCa----CGcCCuuCG----CCGACCaa----GC- -5'
23563 3' -60.6 NC_005261.1 + 120885 0.68 0.590671
Target:  5'- gGGCGGggugcccggGCGGGgcGgGaGCUGGgcCGg -3'
miRNA:   3'- gCCGCCa--------CGCCCuuCgC-CGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 118921 0.66 0.687724
Target:  5'- cCGGCGccGCGGGcgcggcgccgcGCGGCUGGccgCGg -3'
miRNA:   3'- -GCCGCcaCGCCCuu---------CGCCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 117983 0.67 0.660101
Target:  5'- uCGGCGcccauggagcGcGCGGcGGAGCGGCUGGc--- -3'
miRNA:   3'- -GCCGC----------CaCGCC-CUUCGCCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 117588 0.71 0.431298
Target:  5'- cCGGCGGUGCGGGcGGCgaaccgGGCcGGcagUCc -3'
miRNA:   3'- -GCCGCCACGCCCuUCG------CCGaCCa--AGc -5'
23563 3' -60.6 NC_005261.1 + 116582 0.74 0.293278
Target:  5'- cCGGCGGUGCGGc-AGCGGCguccgcgccGGggCGg -3'
miRNA:   3'- -GCCGCCACGCCcuUCGCCGa--------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 116443 0.66 0.699468
Target:  5'- cCGGCGGcUGCGGcGGcccgcgccgcGGCGGCUcgcccGGcgCGc -3'
miRNA:   3'- -GCCGCC-ACGCC-CU----------UCGCCGA-----CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 116000 0.66 0.679859
Target:  5'- gGGCGGgGCGGGGGuGCcGGCUcgaGGcUUCu -3'
miRNA:   3'- gCCGCCaCGCCCUU-CG-CCGA---CC-AAGc -5'
23563 3' -60.6 NC_005261.1 + 115946 0.7 0.440017
Target:  5'- aGGCGG-GCGGGGggGGCGGC-GGa--- -3'
miRNA:   3'- gCCGCCaCGCCCU--UCGCCGaCCaagc -5'
23563 3' -60.6 NC_005261.1 + 114137 0.72 0.357649
Target:  5'- gGGUGGgcagGCGGGGguGGgGGCUGGgugggCGg -3'
miRNA:   3'- gCCGCCa---CGCCCU--UCgCCGACCaa---GC- -5'
23563 3' -60.6 NC_005261.1 + 111602 0.67 0.630324
Target:  5'- -cGCGGaGUGGGc-GCGGCUGGgcugCGg -3'
miRNA:   3'- gcCGCCaCGCCCuuCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 111085 0.66 0.669994
Target:  5'- gGGCcuGGUGUGGGggGCcggGGaCUGGg--- -3'
miRNA:   3'- gCCG--CCACGCCCuuCG---CC-GACCaagc -5'
23563 3' -60.6 NC_005261.1 + 110801 0.69 0.532156
Target:  5'- aCGGCGG-GCGaGGAGGCGGggGcGgaCGg -3'
miRNA:   3'- -GCCGCCaCGC-CCUUCGCCgaC-CaaGC- -5'
23563 3' -60.6 NC_005261.1 + 107112 0.66 0.670982
Target:  5'- gCGGCGGaagccgccgucggcgGCGGGGccgccgGGCGGCaUGGggCc -3'
miRNA:   3'- -GCCGCCa--------------CGCCCU------UCGCCG-ACCaaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.