miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 64275 0.68 0.728459
Target:  5'- ---cGGcCCGGGCGCgccCCGCGUCUgCa -3'
miRNA:   3'- aaguUCaGGUUCGCGa--GGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 64835 0.71 0.575586
Target:  5'- -cCGGGUCCGcGCGCUgcagcgccaugaCCGCGUCgcguCCCa -3'
miRNA:   3'- aaGUUCAGGUuCGCGA------------GGCGCAG----GGG- -5'
23563 5' -57.1 NC_005261.1 + 65842 0.67 0.791508
Target:  5'- -cCGAGUgCCGcgaguAGCGgUCCGCGgcggcuuguacagCCCCa -3'
miRNA:   3'- aaGUUCA-GGU-----UCGCgAGGCGCa------------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 66259 0.72 0.505739
Target:  5'- -gCAccugCCGcGCGCUCCGCG-CCCCg -3'
miRNA:   3'- aaGUuca-GGUuCGCGAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 66438 0.66 0.830197
Target:  5'- -cCGAGaCCAgcgcGGCGCgcgCCGCcgGUCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGa--GGCG--CAGGGg -5'
23563 5' -57.1 NC_005261.1 + 68353 0.66 0.830197
Target:  5'- ---uGG-CCGAGUGCUUCGUGUCgCUCg -3'
miRNA:   3'- aaguUCaGGUUCGCGAGGCGCAG-GGG- -5'
23563 5' -57.1 NC_005261.1 + 68865 0.72 0.515517
Target:  5'- cUCgAGGUCCAGcGCGCgcgcggCCGCGUCgUCg -3'
miRNA:   3'- aAG-UUCAGGUU-CGCGa-----GGCGCAGgGG- -5'
23563 5' -57.1 NC_005261.1 + 69462 0.73 0.448906
Target:  5'- --gAAGUUCGacacGGCgGCUCCGCGgcgCCCCg -3'
miRNA:   3'- aagUUCAGGU----UCG-CGAGGCGCa--GGGG- -5'
23563 5' -57.1 NC_005261.1 + 69938 0.67 0.757733
Target:  5'- --gAGGUCC--GCGC-CCGCGgccggggCCCCg -3'
miRNA:   3'- aagUUCAGGuuCGCGaGGCGCa------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 70521 0.67 0.776704
Target:  5'- -aCGGGgacgaucgCCAcggcGGCGC-CCGCG-CCCCa -3'
miRNA:   3'- aaGUUCa-------GGU----UCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 70839 0.67 0.804158
Target:  5'- ---uGGUCCuGGCGCgcgCgGCGUCUUCg -3'
miRNA:   3'- aaguUCAGGuUCGCGa--GgCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 70928 0.69 0.667891
Target:  5'- -gCGAGcUCCA-GCGcCUgCGCGUCCgCCg -3'
miRNA:   3'- aaGUUC-AGGUuCGC-GAgGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 72703 0.66 0.821689
Target:  5'- -cCAGGUCCGccAGCGUcgcgcCCGCcG-CCCCg -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa----GGCG-CaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 72982 0.75 0.354729
Target:  5'- --gGGGUCCGcgagcgcggccAGCGCgUCCGCGUCCgCCc -3'
miRNA:   3'- aagUUCAGGU-----------UCGCG-AGGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 73446 0.68 0.748074
Target:  5'- -cCAGG-CCGGcCGCgUCCGCGUCCgCg -3'
miRNA:   3'- aaGUUCaGGUUcGCG-AGGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 74227 0.67 0.785998
Target:  5'- cUCGAGgcuauaauagCCGGGCGCgCCGaguaCGUCCCa -3'
miRNA:   3'- aAGUUCa---------GGUUCGCGaGGC----GCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 77455 0.7 0.585776
Target:  5'- -cCAGGcCCGGGgCGCggcugcagCCGCGcCCCCg -3'
miRNA:   3'- aaGUUCaGGUUC-GCGa-------GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 79492 0.68 0.745156
Target:  5'- gUUCAGGUCCAcgaaGGUgcuaaucaccuccaGCUCCGCGagcgggaCCCg -3'
miRNA:   3'- -AAGUUCAGGU----UCG--------------CGAGGCGCag-----GGG- -5'
23563 5' -57.1 NC_005261.1 + 80156 0.71 0.535296
Target:  5'- -gCGGGcCCuGGCGCcgccgUCCGCGUCaCCCu -3'
miRNA:   3'- aaGUUCaGGuUCGCG-----AGGCGCAG-GGG- -5'
23563 5' -57.1 NC_005261.1 + 81504 0.66 0.813006
Target:  5'- --gAAGgcgCCGAuGCGCUCgGCGUggUCCCu -3'
miRNA:   3'- aagUUCa--GGUU-CGCGAGgCGCA--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.