miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 42853 0.66 0.838524
Target:  5'- --aGAGUgCGAGCGCgUCGUGUCCg- -3'
miRNA:   3'- aagUUCAgGUUCGCGaGGCGCAGGgg -5'
23563 5' -57.1 NC_005261.1 + 44645 0.75 0.339169
Target:  5'- -gCGAGgucgCCGAGCGCgcgaUCGCGUCCCg -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa---GGCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 45471 0.7 0.637089
Target:  5'- cUCGgcccGGUCCGagcggcgcgggcGGCGCU-CGCuGUCCCCg -3'
miRNA:   3'- aAGU----UCAGGU------------UCGCGAgGCG-CAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 46143 0.71 0.555334
Target:  5'- -cCGAGaacgCCGAGCGCggcaCUGCG-CCCCa -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa---GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 48023 0.66 0.830197
Target:  5'- -gCGAG----GGCGCUCCGCcGcCCCCg -3'
miRNA:   3'- aaGUUCagguUCGCGAGGCG-CaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 48918 0.67 0.785998
Target:  5'- -gCGAGcCCGGGCGCcagcgCCGCuGUCUCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGa----GGCG-CAGGGg -5'
23563 5' -57.1 NC_005261.1 + 49975 0.68 0.708506
Target:  5'- gUCAuc-CCcGGCGCcgCCGuCGUCCCCc -3'
miRNA:   3'- aAGUucaGGuUCGCGa-GGC-GCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 52419 0.67 0.767279
Target:  5'- --aAAGUCCucgaAGGCG-UCCGCGUCCa- -3'
miRNA:   3'- aagUUCAGG----UUCGCgAGGCGCAGGgg -5'
23563 5' -57.1 NC_005261.1 + 53887 0.66 0.830197
Target:  5'- gUCGAGUCgAAGCgggcccGCUUCGCGagcggCgCCCg -3'
miRNA:   3'- aAGUUCAGgUUCG------CGAGGCGCa----G-GGG- -5'
23563 5' -57.1 NC_005261.1 + 55613 0.7 0.585776
Target:  5'- cUCcuGGUCCAgcAGCGCguccUCCGCGUCgUCa -3'
miRNA:   3'- aAGu-UCAGGU--UCGCG----AGGCGCAGgGG- -5'
23563 5' -57.1 NC_005261.1 + 57829 0.68 0.738313
Target:  5'- --gGGGUCCAcGUGCUCCGCGggCgCg -3'
miRNA:   3'- aagUUCAGGUuCGCGAGGCGCagGgG- -5'
23563 5' -57.1 NC_005261.1 + 58131 0.73 0.447989
Target:  5'- -cCAAG-CCGguaccgcGGCGCgcgcgccggUCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCaGGU-------UCGCG---------AGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 59668 0.66 0.830197
Target:  5'- cUCGgcGGUCCcGGCGCgcgagcggaUCGCGgcUCCCCu -3'
miRNA:   3'- aAGU--UCAGGuUCGCGa--------GGCGC--AGGGG- -5'
23563 5' -57.1 NC_005261.1 + 60201 0.7 0.637089
Target:  5'- --gAAGUCCGcGCGCgcgcucccgCCGCGgggcgCCCCc -3'
miRNA:   3'- aagUUCAGGUuCGCGa--------GGCGCa----GGGG- -5'
23563 5' -57.1 NC_005261.1 + 61744 0.67 0.795152
Target:  5'- -gCGAGcgCCGAGgGCUCgGgGUCCgCg -3'
miRNA:   3'- aaGUUCa-GGUUCgCGAGgCgCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 61924 0.68 0.715523
Target:  5'- gUCGaaGGUgCAcaccuucgccacggGGCGCgcgccgaCCGCGUCCCCc -3'
miRNA:   3'- aAGU--UCAgGU--------------UCGCGa------GGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 62905 0.67 0.767279
Target:  5'- --aAGGUCaCAGG-GCUCCGCGcgCCgCCg -3'
miRNA:   3'- aagUUCAG-GUUCgCGAGGCGCa-GG-GG- -5'
23563 5' -57.1 NC_005261.1 + 63163 0.7 0.606251
Target:  5'- cUCcguGUCCGAcGUGCUCCGCGacacgCCCg -3'
miRNA:   3'- aAGuu-CAGGUU-CGCGAGGCGCa----GGGg -5'
23563 5' -57.1 NC_005261.1 + 63279 0.8 0.181461
Target:  5'- cUCGAGcgcgCCGAGCGCgcccgcgCCGCaGUCCCCg -3'
miRNA:   3'- aAGUUCa---GGUUCGCGa------GGCG-CAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 63551 0.71 0.574569
Target:  5'- -cCAGcUCCc-GCGCggucgcgUCCGCGUCCCCg -3'
miRNA:   3'- aaGUUcAGGuuCGCG-------AGGCGCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.