miRNA display CGI


Results 21 - 40 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 19831 0.69 0.657641
Target:  5'- --aAAGUUCAGcGCGCgcgCgGCGUCCUCg -3'
miRNA:   3'- aagUUCAGGUU-CGCGa--GgCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 22789 0.71 0.565437
Target:  5'- --gGAGUCCGgccgcgAGCGCgagcucgggCCGCGgCCCCg -3'
miRNA:   3'- aagUUCAGGU------UCGCGa--------GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 25071 0.74 0.41304
Target:  5'- -cCAGGagCAGGCGCUCgGCGaUCUCCa -3'
miRNA:   3'- aaGUUCagGUUCGCGAGgCGC-AGGGG- -5'
23563 5' -57.1 NC_005261.1 + 25868 0.68 0.738313
Target:  5'- aUCGAGUCC-AGCaGCUUCaGCGcgCCCa -3'
miRNA:   3'- aAGUUCAGGuUCG-CGAGG-CGCa-GGGg -5'
23563 5' -57.1 NC_005261.1 + 27892 0.71 0.545285
Target:  5'- aUCAGGUgCGcGCGCagCGCGUCCgCg -3'
miRNA:   3'- aAGUUCAgGUuCGCGagGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 28129 0.69 0.678111
Target:  5'- cUCGAGg-CGGGCGCccUCgGCGcCCCCa -3'
miRNA:   3'- aAGUUCagGUUCGCG--AGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 31032 0.69 0.667891
Target:  5'- --aAAG-CCGGcGCGCcgCCGgGUCCCCa -3'
miRNA:   3'- aagUUCaGGUU-CGCGa-GGCgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 31640 0.69 0.688293
Target:  5'- --gAGGUCCAGGaggaGCgCCGCGcggcggCCCCg -3'
miRNA:   3'- aagUUCAGGUUCg---CGaGGCGCa-----GGGG- -5'
23563 5' -57.1 NC_005261.1 + 32378 0.66 0.821689
Target:  5'- ---uGGUgCAGGCGCggcgcggCgGCGUCCCg -3'
miRNA:   3'- aaguUCAgGUUCGCGa------GgCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 32585 0.69 0.698428
Target:  5'- ----cGUCCGcGUcCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGUuCGcGAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 34714 0.68 0.71852
Target:  5'- cUCGAGcCUcAGCGgUCgGCGcCCCCu -3'
miRNA:   3'- aAGUUCaGGuUCGCgAGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 35454 0.77 0.281956
Target:  5'- -gCGGGUCUAGGCGCggcgcgCgCGCGUCCCg -3'
miRNA:   3'- aaGUUCAGGUUCGCGa-----G-GCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 36847 0.68 0.748074
Target:  5'- -cCGGGggCUAGcccGCGCUCCGCccgCCCCg -3'
miRNA:   3'- aaGUUCa-GGUU---CGCGAGGCGca-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 37767 0.66 0.854601
Target:  5'- ----cGcCCAAGCGC-CgGCG-CCCCa -3'
miRNA:   3'- aaguuCaGGUUCGCGaGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 37931 0.68 0.725485
Target:  5'- -gCGAGUaCGAGCGCcggagCCGCGUcgagcgggugcugcCCCCg -3'
miRNA:   3'- aaGUUCAgGUUCGCGa----GGCGCA--------------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 38700 0.69 0.697417
Target:  5'- -cCGGGcCCAAGCcggccagGC-CCGCGcCCCCa -3'
miRNA:   3'- aaGUUCaGGUUCG-------CGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 39445 0.68 0.708506
Target:  5'- -gCAGGgccCCGAGC-CUCCGCGcggcgcggcgCCCCa -3'
miRNA:   3'- aaGUUCa--GGUUCGcGAGGCGCa---------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 39592 0.67 0.776704
Target:  5'- -cCAGcgCCGAGCGC-CgCGCGcCCCCg -3'
miRNA:   3'- aaGUUcaGGUUCGCGaG-GCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 40838 0.66 0.827663
Target:  5'- ----uGUCCAcguaagccucgaagGGCGCgUCCGCGaaggccgCCCCg -3'
miRNA:   3'- aaguuCAGGU--------------UCGCG-AGGCGCa------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 41403 0.68 0.738313
Target:  5'- gUUAcGUCCGAGCGCgccaCGacgaGUCCCUu -3'
miRNA:   3'- aAGUuCAGGUUCGCGag--GCg---CAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.