miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 670 0.73 0.421841
Target:  5'- -cCGAGUCCuGGCcCUCCGCGgacgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 1195 0.69 0.667891
Target:  5'- -cCGGGgCCGGGCGCggCGCGgaccCCCCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGagGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 1586 0.67 0.776704
Target:  5'- aUCGAGcUCCAGGCGgaCCagGCcUUCCCg -3'
miRNA:   3'- aAGUUC-AGGUUCGCgaGG--CGcAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 1773 0.74 0.404353
Target:  5'- -gCGAGUCUggG-GCUgCCGCGUgCCCCu -3'
miRNA:   3'- aaGUUCAGGuuCgCGA-GGCGCA-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 2779 0.66 0.838524
Target:  5'- --gAGGUCCcgcAGCGC-CCGCG-CCgCCu -3'
miRNA:   3'- aagUUCAGGu--UCGCGaGGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 3486 0.68 0.748074
Target:  5'- -gCGGGUCgCGGGUGCcgucgccgagUCCGgGUCCCg -3'
miRNA:   3'- aaGUUCAG-GUUCGCG----------AGGCgCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 3524 0.68 0.748074
Target:  5'- -cCGGGUCUggGCGCgCCGCGgUCgCa -3'
miRNA:   3'- aaGUUCAGGuuCGCGaGGCGC-AGgGg -5'
23563 5' -57.1 NC_005261.1 + 4173 0.69 0.688293
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 4236 0.79 0.192758
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuuccCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa-------------GGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 5592 0.68 0.708506
Target:  5'- -cUAGGgCCGccGCGC-CCGCGUCCUCg -3'
miRNA:   3'- aaGUUCaGGUu-CGCGaGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 7641 0.66 0.838524
Target:  5'- -aCGGG-CCAGGCGCggggCCGCGcggcggcgcuUCCgCCc -3'
miRNA:   3'- aaGUUCaGGUUCGCGa---GGCGC----------AGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 10458 0.71 0.545285
Target:  5'- cUCGAGcagCCGGGCGuCUUCGCGcCCgCCg -3'
miRNA:   3'- aAGUUCa--GGUUCGC-GAGGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 10612 0.66 0.821689
Target:  5'- gUCGcGUCCGgccggccgcuAGCGUUCagCGCGgCCCCg -3'
miRNA:   3'- aAGUuCAGGU----------UCGCGAG--GCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 12939 0.68 0.71852
Target:  5'- -gCGGGUCC-GGCGC-CCGCGgCCUg -3'
miRNA:   3'- aaGUUCAGGuUCGCGaGGCGCaGGGg -5'
23563 5' -57.1 NC_005261.1 + 13037 0.7 0.637089
Target:  5'- -aCGAG-CCAgGGCGCggggCCGCGcgcgCCCCu -3'
miRNA:   3'- aaGUUCaGGU-UCGCGa---GGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 15364 0.67 0.804158
Target:  5'- ----cGUCCcggcGGCGCUCgGCGcCCUCg -3'
miRNA:   3'- aaguuCAGGu---UCGCGAGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 16645 0.66 0.830197
Target:  5'- -aCGAGgCCGAGgGCgagagcgaggCCuCGUCCCCg -3'
miRNA:   3'- aaGUUCaGGUUCgCGa---------GGcGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 18017 0.77 0.268903
Target:  5'- -gCGGGUCCccgcuAGCGCUCC-CGUCCUCg -3'
miRNA:   3'- aaGUUCAGGu----UCGCGAGGcGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 18061 0.71 0.533306
Target:  5'- gUCGAgucGUCCAGGCccaGCUCUGCGgcgcucacguugCCCCa -3'
miRNA:   3'- aAGUU---CAGGUUCG---CGAGGCGCa-----------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 18641 0.73 0.439777
Target:  5'- -cCAGGUCCAAG-GCUCCcaggucucggGCGggCCCCa -3'
miRNA:   3'- aaGUUCAGGUUCgCGAGG----------CGCa-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.