miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 137102 0.69 0.698428
Target:  5'- ----cGUCCGcGUcCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGUuCGcGAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 136895 0.66 0.821689
Target:  5'- ---uGGUgCAGGCGCggcgcggCgGCGUCCCg -3'
miRNA:   3'- aaguUCAgGUUCGCGa------GgCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 135550 0.69 0.667891
Target:  5'- --aAAG-CCGGcGCGCcgCCGgGUCCCCa -3'
miRNA:   3'- aagUUCaGGUU-CGCGa-GGCgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 134856 0.69 0.688293
Target:  5'- -aCGGGgacaAGGCGC-CCGCGcCCCCg -3'
miRNA:   3'- aaGUUCagg-UUCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 132647 0.69 0.678111
Target:  5'- cUCGAGg-CGGGCGCccUCgGCGcCCCCa -3'
miRNA:   3'- aAGUUCagGUUCGCG--AGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 127066 0.67 0.776704
Target:  5'- -aCGGGUCCAuGGUGCcgccgCCGCG-CCgCCg -3'
miRNA:   3'- aaGUUCAGGU-UCGCGa----GGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 126732 0.97 0.011816
Target:  5'- gUUCAAGUCCAAGCG-UCCGCGUCCCCa -3'
miRNA:   3'- -AAGUUCAGGUUCGCgAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 125299 0.7 0.616521
Target:  5'- -gCGGGcgCCGgacccgcgGGCGCUCCGCGgCCUCg -3'
miRNA:   3'- aaGUUCa-GGU--------UCGCGAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 124910 0.66 0.853816
Target:  5'- -gCGAGUgCGAGgGCgCUGCGUacgaggcCCCCg -3'
miRNA:   3'- aaGUUCAgGUUCgCGaGGCGCA-------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 124554 0.66 0.84666
Target:  5'- -cCAcGcCCGcGCGCcCCGCGcCCCCc -3'
miRNA:   3'- aaGUuCaGGUuCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 124253 0.67 0.785998
Target:  5'- -gCAGGcgCCGcgcGGCGCcgcCCGCGcgCCCCg -3'
miRNA:   3'- aaGUUCa-GGU---UCGCGa--GGCGCa-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 123615 0.67 0.795152
Target:  5'- -gCAGGUUCAGGCugcccaucagccGCUgCGCGaucagCCCCa -3'
miRNA:   3'- aaGUUCAGGUUCG------------CGAgGCGCa----GGGG- -5'
23563 5' -57.1 NC_005261.1 + 123489 0.67 0.800574
Target:  5'- -cCAGGgacaCCGGGCGCaccagcggcagugCCGCGUCCgCu -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa------------GGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 123287 0.66 0.854601
Target:  5'- ---uGGUCCGccAGCGcCUCCGCGaUgUCCa -3'
miRNA:   3'- aaguUCAGGU--UCGC-GAGGCGC-AgGGG- -5'
23563 5' -57.1 NC_005261.1 + 122863 0.68 0.727468
Target:  5'- -cCGAGggcgCCGAGCGCcgCCGgGacgucuuUCCCCu -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa-GGCgC-------AGGGG- -5'
23563 5' -57.1 NC_005261.1 + 120732 0.69 0.697417
Target:  5'- -aCGAGcCCA--UGCUCCGCGUcuaggacCCCCg -3'
miRNA:   3'- aaGUUCaGGUucGCGAGGCGCA-------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 120313 0.73 0.458139
Target:  5'- -gCGAGgcugucugCgAGGCGCgCUGCGUCCCCg -3'
miRNA:   3'- aaGUUCa-------GgUUCGCGaGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 118119 0.67 0.776704
Target:  5'- -gCGGGcCCGcGCGCcuugCCGCGgaagCCCCc -3'
miRNA:   3'- aaGUUCaGGUuCGCGa---GGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 116153 0.67 0.785998
Target:  5'- --aGAGgaagCAGcGCGCggucgcggCCGCGUCCCCg -3'
miRNA:   3'- aagUUCag--GUU-CGCGa-------GGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 108754 0.79 0.188926
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuucCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa------------GGCGCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.