miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 106735 0.66 0.838524
Target:  5'- cUCGugcAGcCCcGGCGcCUCCGCGcCCgCCa -3'
miRNA:   3'- aAGU---UCaGGuUCGC-GAGGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 123287 0.66 0.854601
Target:  5'- ---uGGUCCGccAGCGcCUCCGCGaUgUCCa -3'
miRNA:   3'- aaguUCAGGU--UCGC-GAGGCGC-AgGGG- -5'
23563 5' -57.1 NC_005261.1 + 37767 0.66 0.854601
Target:  5'- ----cGcCCAAGCGC-CgGCG-CCCCa -3'
miRNA:   3'- aaguuCaGGUUCGCGaGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 108166 0.66 0.84666
Target:  5'- -gCGcGUCCGccagGGCGCgcggCCGCGgCUCCg -3'
miRNA:   3'- aaGUuCAGGU----UCGCGa---GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 102575 0.66 0.85224
Target:  5'- cUCGccGUCCGcgucGGCGgccucgcccgcgccUUCCGCGUCCUCg -3'
miRNA:   3'- aAGUu-CAGGU----UCGC--------------GAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 107640 0.66 0.853816
Target:  5'- cUCGAGcgCCc-GCGCugcgcgcgcaaacUCCGCGgCCCCg -3'
miRNA:   3'- aAGUUCa-GGuuCGCG-------------AGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 42853 0.66 0.838524
Target:  5'- --aGAGUgCGAGCGCgUCGUGUCCg- -3'
miRNA:   3'- aagUUCAgGUUCGCGaGGCGCAGGgg -5'
23563 5' -57.1 NC_005261.1 + 10612 0.66 0.821689
Target:  5'- gUCGcGUCCGgccggccgcuAGCGUUCagCGCGgCCCCg -3'
miRNA:   3'- aAGUuCAGGU----------UCGCGAG--GCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 16645 0.66 0.830197
Target:  5'- -aCGAGgCCGAGgGCgagagcgaggCCuCGUCCCCg -3'
miRNA:   3'- aaGUUCaGGUUCgCGa---------GGcGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 124554 0.66 0.84666
Target:  5'- -cCAcGcCCGcGCGCcCCGCGcCCCCc -3'
miRNA:   3'- aaGUuCaGGUuCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 7641 0.66 0.838524
Target:  5'- -aCGGG-CCAGGCGCggggCCGCGcggcggcgcuUCCgCCc -3'
miRNA:   3'- aaGUUCaGGUUCGCGa---GGCGC----------AGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 2779 0.66 0.838524
Target:  5'- --gAGGUCCcgcAGCGC-CCGCG-CCgCCu -3'
miRNA:   3'- aagUUCAGGu--UCGCGaGGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 48023 0.66 0.830197
Target:  5'- -gCGAG----GGCGCUCCGCcGcCCCCg -3'
miRNA:   3'- aaGUUCagguUCGCGAGGCG-CaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 136895 0.66 0.821689
Target:  5'- ---uGGUgCAGGCGCggcgcggCgGCGUCCCg -3'
miRNA:   3'- aaguUCAgGUUCGCGa------GgCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 81504 0.66 0.813006
Target:  5'- --gAAGgcgCCGAuGCGCUCgGCGUggUCCCu -3'
miRNA:   3'- aagUUCa--GGUU-CGCGAGgCGCA--GGGG- -5'
23563 5' -57.1 NC_005261.1 + 124910 0.66 0.853816
Target:  5'- -gCGAGUgCGAGgGCgCUGCGUacgaggcCCCCg -3'
miRNA:   3'- aaGUUCAgGUUCgCGaGGCGCA-------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 103809 0.66 0.84666
Target:  5'- -gCAGGggCAGGCGCgggCCGCGcgccaCCCg -3'
miRNA:   3'- aaGUUCagGUUCGCGa--GGCGCag---GGG- -5'
23563 5' -57.1 NC_005261.1 + 85388 0.66 0.854601
Target:  5'- cUCGGGcuUCUgguAGGCGC-CCGCGagCCCg -3'
miRNA:   3'- aAGUUC--AGG---UUCGCGaGGCGCagGGG- -5'
23563 5' -57.1 NC_005261.1 + 84754 0.66 0.838524
Target:  5'- -gCGAGcgCUAGuGCGCgccugCUGCGUCCCg -3'
miRNA:   3'- aaGUUCa-GGUU-CGCGa----GGCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 59668 0.66 0.830197
Target:  5'- cUCGgcGGUCCcGGCGCgcgagcggaUCGCGgcUCCCCu -3'
miRNA:   3'- aAGU--UCAGGuUCGCGa--------GGCGC--AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.